LOCUS       NM_028381               1324 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus YJU2 splicing factor (Yju2), mRNA.
ACCESSION   NM_028381 XM_973201 XM_973248
VERSION     NM_028381.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1324)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1324)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 1324)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 1324)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC031400.1.
            
            On Jun 10, 2007 this sequence version replaced NM_028381.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031400.1, AK013533.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1324
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 29.08 cM"
     gene            1..1324
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /note="YJU2 splicing factor"
                     /db_xref="GeneID:72886"
                     /db_xref="MGI:MGI:1920136"
     exon            1..75
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..996
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /note="coiled-coil domain-containing protein 94;
                     coiled-coil domain containing 94; YJU2 splicing factor
                     homolog"
                     /codon_start=1
                     /product="splicing factor YJU2"
                     /protein_id="NP_082657.1"
                     /db_xref="CCDS:CCDS37660.1"
                     /db_xref="GeneID:72886"
                     /db_xref="MGI:MGI:1920136"
                     /translation="MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCK
                     TCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEH
                     GATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDL
                     NQRQAHVDFEAMLRQHRMSQEQWQQQQEEEDERETAALLEEARHRRLLEDSESEDEAP
                     PSRPRAAARPNPTAILNEVPQTKRKAEALCSKAQLAGLVVPKKVKTEANGASEQVGVP
                     TAAGAPKSRKADNPTPQTPGTSSLSQLGAYGDSEDSDS"
     exon            76..176
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            177..321
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            322..456
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            457..638
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            639..759
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            760..889
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1313
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1280..1285
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /note="hexamer: AATACA"
     polyA_site      1313
                     /gene="Yju2"
                     /gene_synonym="2900016D05Rik; Ccdc94"
                     /note="major polyA site"
ORIGIN      
        1 cccgtagact gaggaccgct tcttcgcttg ttcgctggac aggaagcgaa aatgtcggaa
       61 cggaaagttt taaacaaata ctacccacct gactttgacc catcgaagat cccgaaactc
      121 aagctaccca aggaccggca gtatgtggtg cgtctgatgg cccccttcaa catgaggtgt
      181 aagacgtgtg gagaatacat ctacaagggg aagaagttca atgcacgaaa ggaaacagtc
      241 cagaacgagg cttacctggg cctgccaatc ttccgattct acatcaagtg cacgcgctgc
      301 ttggccgaga tcaccttcaa gacggaccca gagaacacgg actacaccat ggagcacggg
      361 gccacgcgca acttccaggc ggagaagctt ctggaggagg aggagaagcg cgtgcagaag
      421 gagcgagagg atgaggaact gaacaacccc atgaaggtcc tagagaaccg gacgaaggac
      481 tccaagctgg agatggaagt gctggaaaac ctgcaagagc tgaaagacct gaaccagcgg
      541 caggcgcatg tggactttga ggccatgctg cggcagcacc gcatgtctca ggagcagtgg
      601 cagcagcagc aggaggagga agacgagcgg gagacagcgg ccttgctgga ggaggctcgc
      661 catcgaaggc ttctggagga ctctgagtca gaggatgagg cgccaccttc ccgaccacgg
      721 gcagctgcaa gacccaaccc cacagccatc ctcaacgagg taccgcagac caagaggaag
      781 gcagaggccc tgtgcagtaa agcacagttg gcaggcttag ttgtaccaaa gaaggtaaag
      841 acagaagcca acggcgcctc agagcaggtc ggggtgccca ccgccgcagg tgcccccaag
      901 agcaggaagg cggacaaccc tacaccccag acacctggca cgtcctccct gagccagctg
      961 ggtgcatatg gggacagcga ggacagcgac agctgagtgt cagtgatgcc caccgtggtc
     1021 tcatagaccc aagaaatgag gaggagatgg gatcaagcaa gcaccttcag caaaggcctc
     1081 gggaccatct ctgccatggc ctggcagtgt acggagaagc agtgtcccca ggcaccccag
     1141 gacagacagc ctggccctct ccttcagtcc ttgagttgtg tggagcctgt tggccggtcc
     1201 cttcctgcca cagatcagaa cacagtctga cttggggggg gggggcaggg accctatctc
     1261 cctagcacca tctcccaaca atacacaagg cctggggctc catccgaatg caaaaaaaaa
     1321 aaaa
//
