LOCUS       NM_001353930             793 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus YjeF N-terminal domain containing 3 (Yjefn3), mRNA.
ACCESSION   NM_001353930
VERSION     NM_001353930.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Gineste,C., De Winter,J.M., Kohl,C., Witt,C.C., Giannesini,B.,
            Brohm,K., Le Fur,Y., Gretz,N., Vilmen,C., Pecchi,E., Jubeau,M.,
            Cozzone,P.J., Stienen,G.J., Granzier,H., Labeit,S.,
            Ottenheijm,C.A., Bendahan,D. and Gondin,J.
  TITLE     In vivo and in vitro investigations of heterozygous nebulin
            knock-out mice disclose a mild skeletal muscle phenotype
  JOURNAL   Neuromuscul Disord 23 (4), 357-369 (2013)
   PUBMED   23375831
REFERENCE   3  (bases 1 to 793)
  AUTHORS   Rudolph,C., Sigruener,A., Hartmann,A., Orso,E., Bals-Pratsch,M.,
            Gronwald,W., Seifert,B., Kalbitzer,H.R., Verdorfer,I.,
            Luetjens,C.M., Ortmann,O., Bornstein,S.R. and Schmitz,G.
  TITLE     ApoA-I-binding protein (AI-BP) and its homologues hYjeF_N2 and
            hYjeF_N3 comprise the YjeF_N domain protein family in humans with a
            role in spermiogenesis and oogenesis
  JOURNAL   Horm Metab Res 39 (5), 322-335 (2007)
   PUBMED   17533573
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158564.7.
            
            On Feb 8, 2019 this sequence version replaced NM_001353930.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1858074.1,
                                           ERR3363660.38779.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                AC158564.7         87937-88009         c
            74-182              AC158564.7         84892-85000         c
            183-293             AC158564.7         83469-83579         c
            294-407             AC158564.7         83235-83348         c
            408-558             AC158564.7         83013-83163         c
            559-793             AC158564.7         81814-82048         c
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.02 cM"
     gene            1..793
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /note="YjeF N-terminal domain containing 3"
                     /db_xref="GeneID:234365"
                     /db_xref="MGI:MGI:2681845"
     exon            1..73
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /inference="alignment:Splign:2.1.0"
     CDS             9..764
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /note="apoA-I-binding protein 2"
                     /codon_start=1
                     /product="yjeF N-terminal domain-containing protein 3"
                     /protein_id="NP_001340859.1"
                     /db_xref="CCDS:CCDS90407.1"
                     /db_xref="GeneID:234365"
                     /db_xref="MGI:MGI:2681845"
                     /translation="MSSSVHNNTGPVQLPEERRFLSASEAAALERELLEEYRFGRQQL
                     VELCGHASAVAVTKAFPLPSLSRKQRTVLVVCGPEQNGAVGLACARHLRVFEYQPSIF
                     CPARSADALHRDLTTQCEKMDIPFLSFLPAEVRLIDDAYGLVVDAVLGPGVRLAEAGG
                     HCARALATLKRLSIPLVSLDVPSGWDAEAGGDAKDAVQPDVLVSLAAPKSCAGRFSGR
                     LHFVAGRFVPDDVRRKFGLHLPKYTGTDCVASL"
     exon            74..182
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /inference="alignment:Splign:2.1.0"
     exon            183..293
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /inference="alignment:Splign:2.1.0"
     exon            294..407
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /inference="alignment:Splign:2.1.0"
     exon            408..558
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /inference="alignment:Splign:2.1.0"
     exon            559..793
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      773..778
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /note="hexamer: AATAAA"
     polyA_site      793
                     /gene="Yjefn3"
                     /gene_synonym="Gm175; hYjeF_N3; YjeF_N3"
                     /note="major polyA site"
ORIGIN      
        1 atgcgaccat gagcagcagt gtgcacaaca acacgggccc tgtccagttg ccagaggaga
       61 ggcgctttct cagcgcctcg gaggcggccg ctctggaacg ggagctactg gaggagtacc
      121 gctttgggag gcagcagctg gtggaactat gtgggcacgc tagtgcggtg gctgtgacca
      181 aggccttccc cttgccctcg ctgtcgcgga agcagaggac agtgctggtt gtgtgcggcc
      241 cggagcagaa tggcgccgtg gggctggcgt gtgcccggca cctgcgggtg ttcgaatacc
      301 agcccagcat cttctgcccc gcgcgttcgg ccgacgcgct gcaccgtgac ctgaccacgc
      361 agtgcgagaa gatggacatc cccttcctgt ccttcctgcc tgccgaggtg cggctcatcg
      421 acgacgcgta cgggctggtg gtggacgcag tgcttgggcc gggagtgcgg ctggctgaag
      481 caggcgggca ctgcgcgcgc gcgctggcca cgctgaagcg actctccatc ccgcttgtga
      541 gcctggacgt cccctcaggc tgggatgcgg aggctggcgg agacgcaaag gacgcggtgc
      601 agcccgatgt gctggtgtcc cttgcagcgc ccaagagctg cgccggccgc ttctccggac
      661 gtctccactt tgtagccggc aggttcgtgc ctgatgacgt ccgccgaaag tttggcctgc
      721 acctgccaaa atatactggc accgactgcg tggcctcact gtgaaccgca ccaataaaca
      781 tctccaccac ctc
//
