LOCUS       NM_023784               1219 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus Yip1 domain family, member 7 (Yipf7), mRNA.
ACCESSION   NM_023784
VERSION     NM_023784.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1219)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1219)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1219)
  AUTHORS   Barone,V., Mazzoli,E., Kunic,J., Rossi,D., Tronnolone,S. and
            Sorrentino,V.
  TITLE     Yip1B isoform is localized at ER-Golgi intermediate and cis-Golgi
            compartments and is not required for maintenance of the Golgi
            structure in skeletal muscle
  JOURNAL   Histochem Cell Biol 143 (3), 235-243 (2015)
   PUBMED   25208654
  REMARK    GeneRIF: The following skeletal muscle development, the expression
            of the Yip1A decreases and is replaced by the muscle-specific Yip1B
            isoform.
REFERENCE   4  (bases 1 to 1219)
  AUTHORS   Tang,B.L., Ong,Y.S., Huang,B., Wei,S., Wong,E.T., Qi,R.,
            Horstmann,H. and Hong,W.
  TITLE     A membrane protein enriched in endoplasmic reticulum exit sites
            interacts with COPII
  JOURNAL   J Biol Chem 276 (43), 40008-40017 (2001)
   PUBMED   11489904
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC109186.7 and AK009405.1.
            
            On Mar 26, 2011 this sequence version replaced NM_023784.4.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089576.1, AK009405.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849390 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AC109186.7         97348-97397         c
            51-1218             AK009405.1         2-1169
            1219-1219           AC109186.7         71420-71420         c
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 37.13 cM"
     gene            1..1219
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /note="Yip1 domain family, member 7"
                     /db_xref="GeneID:75581"
                     /db_xref="MGI:MGI:1922831"
     exon            1..87
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            88..204
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..853
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /codon_start=1
                     /product="protein YIPF7"
                     /protein_id="NP_076273.1"
                     /db_xref="CCDS:CCDS19321.1"
                     /db_xref="GeneID:75581"
                     /db_xref="MGI:MGI:1922831"
                     /translation="MSNPEQYDMGFYQSNYIIDNQEPSCNDSNAYGNVYGYREPQATE
                     QPSSPAPPEMFLPSDYGGQLFQPASNLDYYSQSPSVDTFDEEPPLLEELGINFDHIWQ
                     KTLTVLNPMKPADGSIMNETDLTGPILFCVALGATLLMAGKAQFGYVYGMSAIGCLGI
                     HALLNLMSNSGVSYGCVASVLGYCLLPMVLLSSCAVFFSLQGTIGTMSALLIITWCSL
                     SASKIFISALAMEGQQLLVAYPCALLYGLFALLTVF"
     exon            205..362
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            363..508
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            509..690
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /inference="alignment:Splign:2.1.0"
     exon            691..1219
                     /gene="Yipf7"
                     /gene_synonym="2310016N21Rik; Yip1b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgcgtcatc ttttcaccca ctgattagct ttcatttccc aagttcagct acgtttgttg
       61 gaggatcttc cctcatagca tacataggat gtcaaaccca gaacagtatg acatgggctt
      121 ctaccaatct aattatatca ttgataatca ggagccgagt tgcaatgatt ctaatgctta
      181 tggaaatgtt tatggataca gagagccaca agccactgag cagccttcct ctccagctcc
      241 accagagatg ttcctgccat cagattacgg agggcagctt tttcagccag catccaactt
      301 ggattattac tcacagtctc cctcagttga cacttttgat gaagagcccc ctttgctaga
      361 ggaacttgga attaattttg atcacatatg gcagaaaacc ttgacggtgc taaacccaat
      421 gaagccagca gatggcagca tcatgaatga aacggatctc acaggaccca tccttttctg
      481 tgtggctctg ggagccacat tgcttatggc tggaaaagcc cagtttggtt atgtatacgg
      541 catgagtgcc attggctgcc ttgggattca cgccttactg aacttgatga gcaactccgg
      601 ggtgtcatat ggctgtgtgg ccagtgtgct gggatactgc ttgctcccca tggtcctctt
      661 gtccagctgt gcagtcttct tttcactgca gggtaccata ggaaccatgt cagccctgct
      721 catcattacc tggtgcagtc tctcagcttc taagatcttc atttcggcct tggccatgga
      781 aggacagcag cttcttgtcg cttacccctg tgccttactt tatggactct ttgcccttct
      841 gaccgttttc taaagactgc ttgaagtgac tttgcaagat cctacctgtt ggctcttcag
      901 atttttctgg aagtgcattt ccattcaaat cctgtgagat aacttccgtg ttatttctgt
      961 tgcgagaata ttaagcagag agacaagaca gtgctcaatg atagttctct actagcctgt
     1021 tggtggggat gatgttttga ttttttttta gcctggagca ttaaaacagt taaaatgttt
     1081 tgaaatatta agagatacag tcttggtgct gatgaatgct gtttttctca atagacatgc
     1141 ttctgagaaa ttgtaagcaa aataccatct tatgcttaac atttattaac tctataataa
     1201 atatttttca aaaactttc
//
