LOCUS       NM_023311               2329 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus Yip1 domain family, member 5 (Yipf5), mRNA.
ACCESSION   NM_023311
VERSION     NM_023311.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2329)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2329)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 2329)
  AUTHORS   Barone,V., Mazzoli,E., Kunic,J., Rossi,D., Tronnolone,S. and
            Sorrentino,V.
  TITLE     Yip1B isoform is localized at ER-Golgi intermediate and cis-Golgi
            compartments and is not required for maintenance of the Golgi
            structure in skeletal muscle
  JOURNAL   Histochem Cell Biol 143 (3), 235-243 (2015)
   PUBMED   25208654
REFERENCE   4  (bases 1 to 2329)
  AUTHORS   Kano,F., Tanaka,A.R., Yamauchi,S., Kondo,H. and Murata,M.
  TITLE     Cdc2 kinase-dependent disassembly of endoplasmic reticulum (ER)
            exit sites inhibits ER-to-Golgi vesicular transport during mitosis
  JOURNAL   Mol Biol Cell 15 (9), 4289-4298 (2004)
   PUBMED   15254263
REFERENCE   5  (bases 1 to 2329)
  AUTHORS   Tang,B.L., Ong,Y.S., Huang,B., Wei,S., Wong,E.T., Qi,R.,
            Horstmann,H. and Hong,W.
  TITLE     A membrane protein enriched in endoplasmic reticulum exit sites
            interacts with COPII
  JOURNAL   J Biol Chem 276 (43), 40008-40017 (2001)
   PUBMED   11489904
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY286385.1, AK010089.1 and AV120181.2.
            
            On Jul 19, 2005 this sequence version replaced NM_023311.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK153123.1, SRR1660817.162415.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                BY286385.1         32-72
            42-1657             AK010089.1         2-1617
            1658-2329           AV120181.2         332-1003
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 21.28 cM"
     gene            1..2329
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /note="Yip1 domain family, member 5"
                     /db_xref="GeneID:67180"
                     /db_xref="MGI:MGI:1914430"
     exon            1..172
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /inference="alignment:Splign:2.1.0"
     exon            173..292
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..956
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /note="YIP1 family member 5; YPT-interacting protein 1 A"
                     /codon_start=1
                     /product="protein YIPF5"
                     /protein_id="NP_075800.1"
                     /db_xref="CCDS:CCDS29207.1"
                     /db_xref="GeneID:67180"
                     /db_xref="MGI:MGI:1914430"
                     /translation="MSGFDNLNSGFYQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDY
                     SQQGRFVPPDMMQPQQTYTGQIYQPTQAYPPTTPQPFYGDSFEEEPPLLEELGINFDH
                     IWQKTLTVLHPLRAADGSIMNETDLAGPVVFCLAFGATLLLAGKIQFGYVYGISAIGC
                     LGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVVFSLQGMVGILLTATIIGW
                     CSFSASKIFISALAMDGQQLLVAYPCALLYGVFALISVF"
     exon            293..465
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /inference="alignment:Splign:2.1.0"
     exon            466..611
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /inference="alignment:Splign:2.1.0"
     exon            612..793
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /inference="alignment:Splign:2.1.0"
     exon            794..2329
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1746..1751
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
                     /note="hexamer: ATTAAA"
     polyA_site      1765
                     /gene="Yipf5"
                     /gene_synonym="2610311I19Rik; Yip1a"
ORIGIN      
        1 ccggctaggg cgcctgcgcg ggcgggcgtg cccccggaag cagttcctcg gcctgtgaca
       61 cgtagcaaca gggctaccgc cgggtctgga gctgagttgg aggggttact aggggccgct
      121 ggagctacag ccgttactgc cgccgccgcc gccgccgccg ccgaggcgtt tgatcgttgg
      181 caatgtcagg ctttgataac ttaaacagcg gtttctacca gacgagttac agcatcgacg
      241 agcaatctca gcagtcctat gactatggag gaagtggagg accctacagc aagcagtatg
      301 ctggctgtga ctactcgcag caaggccgat ttgtccctcc agacatgatg cagccacagc
      361 agacatacac tgggcagatt taccagccaa ctcaggccta tcctccaaca acacctcagc
      421 cattctatgg agacagcttt gaggaggagc cccctctgtt agaagagttg ggtatcaatt
      481 ttgaccacat ttggcaaaaa acactaacgg tgctacaccc cctgagggca gctgacggca
      541 gcatcatgaa tgagacggac ttggcagggc cagtggtgtt ctgccttgcc tttggggcca
      601 cactgttact ggctggcaaa atccagtttg gctacgtata cgggatcagt gcgattggat
      661 gtttaggaat gttttgtttg ttaaatttaa tgagtatgac aggtgtgtca tttggctgtg
      721 tggcaagtgt cctgggctat tgtcttcttc ccatgatcct gttgtccagc tttgcagtgg
      781 tattttcttt acaaggaatg gtaggaattc ttctcactgc cacaattatt ggatggtgta
      841 gtttttctgc ttccaaaatt tttatttctg cattagctat ggatggacaa caacttttag
      901 tggcatatcc ctgtgctttg ttgtatggag tctttgccct gatttctgtc ttctgaactg
      961 attttgtctg ggacatgata tcagtgggcc gaattcataa aaaggacctt ggactcttaa
     1021 aattggacca gcaaacaact gcagtgcagc tcattccgct tctcagtagc ctggaagtga
     1081 cagaaataga catttgttca tttgtacagg acagttgaac accgtggagt cacctgagtc
     1141 ggcttagcag ctctgagtgt ttgtgctcac acagctaaga aggatgattt ctttcctgat
     1201 cctaccgcct ttaacaactc tttttcctta caaattataa taggatgttt tgatagattt
     1261 ttaccaagtg gaaaaccaac cacaaagctg ataatctttc tcaaaaacaa cccagttata
     1321 gtaaagaaga aacaagtttt actgcagaaa tatttttcat aggaattagg aaagaaaata
     1381 gttgctgtgt cctcaagtta agtgcactga agtaaagctg aacaaaaccg aattccaacc
     1441 tagagctttt tgagtttgca catcaaatat ttgacattcc tataaattgt ctcatgaaac
     1501 ctatgctgag attcagagat acaagcagtt cacaatctac cttactacag agatgaaata
     1561 tgaacaactg tttagacatt aaatgtgtca actcaatgtg gactggccac gtgaatgctt
     1621 agttctgtct ccacatgccc cacaaaaaaa aaaaaaaaga aatcactaag tttttttgag
     1681 aaaacaatat ttaaaatctc acaatttcag tattgcatta tcagtgtata gtggatttga
     1741 tgcttattaa atttttccca attaactctg ctgtgaagtt tactttctct aaactactgt
     1801 tctctgtctt cttttcatta gggtttgatt ttcacttctg atataaactc agttttaaaa
     1861 gtagaagtaa tctagtgtgc agtcaggcag agacaaagtt agaaggtgtt tactttgaat
     1921 gacagtatta cttcctgact ttaaattcaa ttgttttata tcattattac agattctgga
     1981 gacacaatct gtaggaacat gttacatatg ctgtgtgtgg actcctggct tttaaaccgt
     2041 ctcagatttt ggacaattct cagtagtagt taagaacaag aatgagatag aaaataaggt
     2101 ctgacctttt tataagagga gaccagcagc caaaagaaaa atactaaatt aatatgtgta
     2161 tactattttt agagtaaatt ttcacataga aaaggagcgt cacacatgat tttcttactt
     2221 tattcttggt gttgtggatg atcttacttt attcttggtg ttgtgggttt catcctgatg
     2281 ctaagtttca gactatactt tgacacttaa taaattgctt ttgaaactt
//
