LOCUS       NM_026417               2133 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus Yip1 domain family, member 4 (Yipf4), mRNA.
ACCESSION   NM_026417
VERSION     NM_026417.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY709789.1 and AK083301.1.
            
            On Mar 26, 2011 this sequence version replaced NM_026417.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK083301.1, AK166347.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                BY709789.1         1-21
            22-2133             AK083301.1         2-2113
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 45.64 cM"
     gene            1..2133
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /note="Yip1 domain family, member 4"
                     /db_xref="GeneID:67864"
                     /db_xref="MGI:MGI:1915114"
     exon            1..302
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             224..964
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /codon_start=1
                     /product="protein YIPF4"
                     /protein_id="NP_080693.2"
                     /db_xref="CCDS:CCDS28971.1"
                     /db_xref="GeneID:67864"
                     /db_xref="MGI:MGI:1915114"
                     /translation="MQPPGPPPAYAPANGDFTFVSSADAEDLSGSIAAPDVKLNLGVS
                     GDFIKESTATTFLRQRGYGWLLEVEDEDPEDNKPLLEELDIDLKDIYYKIRCVLMPMP
                     SLGFNRQVVRDNPDFWGPLAVVLFFSMISLYGQFRVVSWIITIWIFGSLTIFLLARVL
                     GGEVAYGQVLGVIGYSLLPLIVIAPILLVVGSFEMVSTLIKLFGVFWAAYSAASLLVG
                     EEFKTKKPLLIYPIFLLYIYFLSLYTGV"
     exon            303..462
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            463..634
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            635..712
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            713..826
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            827..2133
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1206..1211
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1228
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /note="major polyA site"
     regulatory      1795..1800
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1831
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
     polyA_site      2035
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
     polyA_site      2089
                     /gene="Yipf4"
                     /gene_synonym="2310034L04Rik"
ORIGIN      
        1 ggcgctgtca ctgttatggt cctgtcaggg ccccggcgtc gtggtgcttg ggtgctcgcc
       61 accggctggc ctcgggtgcg acctggtcgg cagccagagg ctgcgcttag ctcgcgcgtc
      121 ccctccctcg gccgagcccg cgcctcctgg ctcgcaggcc gccccttagc aggtcgtccc
      181 ggagccccgg gcccagccgc tcgtcagcac cgaggccggc gggatgcagc ctccgggccc
      241 gcccccggcc tatgcgcctg ccaacgggga cttcaccttt gtgtcttcgg cggacgcgga
      301 agatctcagc ggttctatag cagctccaga tgtcaaatta aacctcggtg taagcggaga
      361 tttcatcaaa gaatctacag ctactacatt tctgagacaa agaggctatg gctggctttt
      421 ggaagttgaa gatgaggatc ctgaagataa caagccactt ttggaagaat tggacatcga
      481 tctaaaggac atttactaca agatccgctg tgttctgatg ccaatgccat cgctgggttt
      541 taatagacag gtggtgagag acaatcctga cttctggggt ccactggctg ttgttctttt
      601 cttttccatg atatcattat atggacagtt tagggtggtc tcatggatta taaccatttg
      661 gatatttggt tcactgacaa ttttcttact ggctagagtt cttggtggag aagttgcata
      721 tggccaagtt cttggagtta taggatattc attacttcct ctcattgtaa tagcccctat
      781 acttttggtg gttggatctt ttgaaatggt atctacactt ataaaactgt ttggtgtgtt
      841 ctgggctgcc tacagtgctg cttcattact cgtaggtgaa gaattcaaga ccaaaaagcc
      901 cctcctcatt taccccatct ttttattgta catttatttt ttgtccttat atactggagt
      961 gtgatccaag ttgtacatga atcaaaaaga tggtgttaca tttgtattac gctgggaatt
     1021 cttgctggag ggattggaga aaatattact agtaaaattt tatacattcc agatagagag
     1081 gcaggcttaa agtcttttta aaacaatatt ttttgtattt aagtaattgc agttatctgg
     1141 gatttttttt tctttttttt ggtcagaatt ctgaattctg tttggttctt catattccgc
     1201 gaataaataa aaagcgttgt gtttttcaga ttgtgtcaat attcacctga acacttgtgc
     1261 caaaagcacc tggatgggga gttgtgtttc acatgaagta taaatttgac aacatcctga
     1321 aaaatctaaa agtgcaattt ttttctttaa agaattttct ctggcaccac agatcctgta
     1381 gatacctatt tatatttata catatatatt tatgaaataa ttcttattca caaaatatat
     1441 ttctgaatag cctaaaaatt aagatactaa atctgatgct taaattttct ttaatttggc
     1501 tattactgtt ttttgtttaa aacttaaaac ttgcttttta aattgtgtat agattttaat
     1561 ctaatagttg ctggtataga tttggactgt gtgtgtgtgc tcttaagaaa acagttttga
     1621 atgtctaaac atttgattta aagttccctg tttatctttt tgaccaaagg agcaagagat
     1681 ataatggata tggcattcat taaaatcatt aatatatagg aaaaataata tttatagcat
     1741 cagcaaatat ttttaagtgg tatatgatct tggacaatgt tatatgaagt agaaaataaa
     1801 atgttttcca gctgtgtgtt ttgttttaca ataccttgtc ctatattact tgagactttt
     1861 aacaagtatt gtttttttct aacatattta cagtttttgc taggggaaat attaagaaaa
     1921 ttttatcaca gtttttttgt aaatcatgga ttctgtatat atctctaata ttactttgta
     1981 aattagacaa actattttat ctgtgtctac aaaatagcaa atccctgtta gcaaattatt
     2041 gtattattct ttctgacatt gcccccaaaa ggttaacttc tgttcctgat atggtatgac
     2101 atcgtctctg tgttccttag gcaagacaga tct
//
