LOCUS       NM_001414051            1957 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus Yip1 domain family, member 3 (Yipf3), transcript
            variant 8, mRNA.
ACCESSION   NM_001414051 XM_036160635
VERSION     NM_001414051.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Prost,S., LeDiscorde,M., Haddad,R., Gluckman,J.C., Canque,B. and
            Kirszenbaum,M.
  TITLE     Characterization of a novel hematopoietic marker expressed from
            early embryonic hematopoietic stem cells to adult mature lineages
  JOURNAL   Blood Cells Mol Dis 29 (2), 236-248 (2002)
   PUBMED   12490290
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116739.13.
            
            On Nov 15, 2022 this sequence version replaced XM_036160635.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422601.1504133.1,
                                           ERR3363658.1439246.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               AC116739.13        45373-45608         c
            237-434             AC116739.13        44663-44860         c
            435-480             AC116739.13        43245-43290         c
            481-573             AC116739.13        43039-43131         c
            574-705             AC116739.13        42776-42907         c
            706-819             AC116739.13        42474-42587         c
            820-974             AC116739.13        42214-42368         c
            975-1957            AC116739.13        41153-42135         c
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..1957
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="Yip1 domain family, member 3"
                     /db_xref="GeneID:28064"
                     /db_xref="MGI:MGI:106280"
     exon            1..236
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            237..434
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            435..480
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             448..1152
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="isoform 8 is encoded by transcript variant 8;
                     protein YIPF3; killer lineage protein 1; YIP1 family
                     member 3; natural killer cell-specific antigen KLIP1"
                     /codon_start=1
                     /product="protein YIPF3 isoform 8"
                     /protein_id="NP_001400980.1"
                     /db_xref="GeneID:28064"
                     /db_xref="MGI:MGI:106280"
                     /translation="MIPIKMVNFPQKVAGELYGPLMLVFTLVAILLHGMKTSDTIIRE
                     GTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYN
                     IHLHALFYLFWLLVGGLSTLRMGLLNCLPVALGGSVGVADCGPYSAAAALWHAGCPAH
                     ALPALSALRLPQSGGGDPGHPGGPQHPTHAEGPQRHPRCAPCCQAARRCDQCYRQGNS
                     SDSAVTLTLSEILGLP"
     exon            481..573
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            574..705
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            706..819
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            820..974
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1957
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1404..1409
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="hexamer: ATTAAA"
     polyA_site      1426
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="major polyA site"
     regulatory      1937..1942
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="hexamer: AATAAA"
     polyA_site      1957
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
ORIGIN      
        1 aagtggggcc aaacatccgg gtttctccct tcggcgtccc ggcggatccc caccttgccc
       61 gggcggtcgc ccctctgaac ctctccctcc ctcggacccg ggtcgcacgc tcttcccacg
      121 cgcgcgtgct ccagcgacgg gaagcctcga gggacatggc gactccggcg gcgccggcca
      181 gcggcgtccg aaatggtgct ggcccggaat ggggaggctt cgaagaaaac atccagggtg
      241 ggggttcggc tgtgattgat atggagaaca tggacgatac ctcaggctcc agcttcgagg
      301 acatgggtga gctgcaccag cgcctgcggg aggaagaagt agatgctgat gcagctgctg
      361 cagaagaaga ggatggggag tttcttggca tgaaaggctt taaaggacaa ctgagccggc
      421 aggtagcaga tcaggctcct ggagtccatg atccctatca agatggtcaa cttcccccag
      481 aaagtcgcgg gcgagctcta cggaccgctc atgctggtct tcacactggt ggccatcctc
      541 ctgcatggaa tgaagacttc tgacaccatt atccgggagg gcaccctcat gggcacagcc
      601 ataggcacct gctttggata ctggctgggt gtctcgtcct tcatttattt ccttgcctac
      661 ctgtgtaacg cccagatcac catgctacag atgttggcac tgctgggcta cggcctcttc
      721 gggcactgca tagtcctgtt catcacctat aacatccacc ttcatgccct cttctacctc
      781 ttctggctgc tggtgggtgg gctctctacc ctgcgcatgg gccttctgaa ctgtctacct
      841 gtggccctag gtggcagtgt tggtgtcgcg gactgtgggc cctactcagc ggctgctgct
      901 ctgtggcacg ctggctgccc tgcacatgct cttcctgctc tatctgcact tcgcctacca
      961 caaagtggtg gaggggatcc tggacaccct ggagggcccc aacatcccac ccatgcagag
     1021 ggtccccaga gacatccccg ctgtgctccc tgctgccagg ctgcccgtcg ctgtgatcaa
     1081 tgctaccgcc aaggcaatag cagtgactct gcagtcacat tgaccctctc tgaaatcctc
     1141 ggcctgccct gacccccagc tccggggcag aggaagatta aaggacagta ctgaggatgt
     1201 gtgtgcccag gtctgcagcc accaggctgt ggctgcctaa acacctgctg ggcaccaggc
     1261 ttggcttctg aagggcacaa gaccaggaac tcacagctag gactgcaagt ctctgcagcc
     1321 aagtgcagaa tatgggtcag ctcttctgag gccctcaccc cctttctctc tactcccctt
     1381 ctgtcctaaa tatagacttg gtaattaaaa tactgattga agtctagacc tgtagctcct
     1441 gttggcagcc atcctcctgc cacccgttct gatgcccatt actgccccac agagcagtgg
     1501 gtaggcagcc cacagtcctc atgtataatg ctaggctggc tgtccttttg agaggccagg
     1561 gcaacaatga caaatttcca cttacatcat tacaaagacc cctgtgctat catgagagaa
     1621 tgtccccatc agctgacatt tgaagctaag catggtctaa gtgttagtga ccagcaccct
     1681 ttaacctcca cggaaggaaa tccaggccaa gtgtacattg cttttcatcg cagcaggtgc
     1741 acaggaacat ggatcttcaa ggccaaccca gtcaacagag ttccaaacca cttagggcca
     1801 tacagttctt tgaggggact agaccagttc ccagcaccca tgctggatgg ttcacagttg
     1861 cttttagctc cagctcctcc aaggacctca gggtgcctgc actcactgca caggcacaag
     1921 cattaacata attaaaaata aaacctgctg gatggtt
//
