LOCUS       NM_001414050            2064 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus Yip1 domain family, member 3 (Yipf3), transcript
            variant 7, mRNA.
ACCESSION   NM_001414050 XM_036160634
VERSION     NM_001414050.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Prost,S., LeDiscorde,M., Haddad,R., Gluckman,J.C., Canque,B. and
            Kirszenbaum,M.
  TITLE     Characterization of a novel hematopoietic marker expressed from
            early embryonic hematopoietic stem cells to adult mature lineages
  JOURNAL   Blood Cells Mol Dis 29 (2), 236-248 (2002)
   PUBMED   12490290
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116739.13.
            
            On Nov 15, 2022 this sequence version replaced XM_036160634.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784647.1216970.1,
                                           SRR7345562.4451884.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               AC116739.13        45373-45608         c
            237-434             AC116739.13        44663-44860         c
            435-541             AC116739.13        44416-44522         c
            542-587             AC116739.13        43245-43290         c
            588-680             AC116739.13        43039-43131         c
            681-812             AC116739.13        42776-42907         c
            813-926             AC116739.13        42474-42587         c
            927-1081            AC116739.13        42214-42368         c
            1082-2064           AC116739.13        41153-42135         c
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..2064
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="Yip1 domain family, member 3"
                     /db_xref="GeneID:28064"
                     /db_xref="MGI:MGI:106280"
     exon            1..236
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..1259
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="isoform 7 is encoded by transcript variant 7;
                     protein YIPF3; killer lineage protein 1; YIP1 family
                     member 3; natural killer cell-specific antigen KLIP1"
                     /codon_start=1
                     /product="protein YIPF3 isoform 7"
                     /protein_id="NP_001400979.1"
                     /db_xref="GeneID:28064"
                     /db_xref="MGI:MGI:106280"
                     /translation="MATPAAPASGVRNGAGPEWGGFEENIQGGGSAVIDMENMDDTSG
                     SSFEDMGELHQRLREEEVDADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQA
                     SRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKVAGELYGPLMLVFTL
                     VAILLHGMKTSDTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLAL
                     LGYGLFGHCIVLFITYNIHLHALFYLFWLLVGGLSTLRMGLLNCLPVALGGSVGVADC
                     GPYSAAAALWHAGCPAHALPALSALRLPQSGGGDPGHPGGPQHPTHAEGPQRHPRCAP
                     CCQAARRCDQCYRQGNSSDSAVTLTLSEILGLP"
     exon            237..434
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            435..541
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            542..587
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..680
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            681..812
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            813..926
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1081
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..2064
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1511..1516
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="hexamer: ATTAAA"
     polyA_site      1533
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="major polyA site"
     regulatory      2044..2049
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="hexamer: AATAAA"
     polyA_site      2064
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
ORIGIN      
        1 aagtggggcc aaacatccgg gtttctccct tcggcgtccc ggcggatccc caccttgccc
       61 gggcggtcgc ccctctgaac ctctccctcc ctcggacccg ggtcgcacgc tcttcccacg
      121 cgcgcgtgct ccagcgacgg gaagcctcga gggacatggc gactccggcg gcgccggcca
      181 gcggcgtccg aaatggtgct ggcccggaat ggggaggctt cgaagaaaac atccagggtg
      241 ggggttcggc tgtgattgat atggagaaca tggacgatac ctcaggctcc agcttcgagg
      301 acatgggtga gctgcaccag cgcctgcggg aggaagaagt agatgctgat gcagctgctg
      361 cagaagaaga ggatggggag tttcttggca tgaaaggctt taaaggacaa ctgagccggc
      421 aggtagcaga tcagatgtgg caggcaggga agagacaggc ttccagggcc ttcagcttgt
      481 atgccaacat tgacatcctc agaccctact ttgatgtgga gcctgcccag gtccgaagca
      541 ggctcctgga gtccatgatc cctatcaaga tggtcaactt cccccagaaa gtcgcgggcg
      601 agctctacgg accgctcatg ctggtcttca cactggtggc catcctcctg catggaatga
      661 agacttctga caccattatc cgggagggca ccctcatggg cacagccata ggcacctgct
      721 ttggatactg gctgggtgtc tcgtccttca tttatttcct tgcctacctg tgtaacgccc
      781 agatcaccat gctacagatg ttggcactgc tgggctacgg cctcttcggg cactgcatag
      841 tcctgttcat cacctataac atccaccttc atgccctctt ctacctcttc tggctgctgg
      901 tgggtgggct ctctaccctg cgcatgggcc ttctgaactg tctacctgtg gccctaggtg
      961 gcagtgttgg tgtcgcggac tgtgggccct actcagcggc tgctgctctg tggcacgctg
     1021 gctgccctgc acatgctctt cctgctctat ctgcacttcg cctaccacaa agtggtggag
     1081 gggatcctgg acaccctgga gggccccaac atcccaccca tgcagagggt ccccagagac
     1141 atccccgctg tgctccctgc tgccaggctg cccgtcgctg tgatcaatgc taccgccaag
     1201 gcaatagcag tgactctgca gtcacattga ccctctctga aatcctcggc ctgccctgac
     1261 ccccagctcc ggggcagagg aagattaaag gacagtactg aggatgtgtg tgcccaggtc
     1321 tgcagccacc aggctgtggc tgcctaaaca cctgctgggc accaggcttg gcttctgaag
     1381 ggcacaagac caggaactca cagctaggac tgcaagtctc tgcagccaag tgcagaatat
     1441 gggtcagctc ttctgaggcc ctcaccccct ttctctctac tccccttctg tcctaaatat
     1501 agacttggta attaaaatac tgattgaagt ctagacctgt agctcctgtt ggcagccatc
     1561 ctcctgccac ccgttctgat gcccattact gccccacaga gcagtgggta ggcagcccac
     1621 agtcctcatg tataatgcta ggctggctgt ccttttgaga ggccagggca acaatgacaa
     1681 atttccactt acatcattac aaagacccct gtgctatcat gagagaatgt ccccatcagc
     1741 tgacatttga agctaagcat ggtctaagtg ttagtgacca gcacccttta acctccacgg
     1801 aaggaaatcc aggccaagtg tacattgctt ttcatcgcag caggtgcaca ggaacatgga
     1861 tcttcaaggc caacccagtc aacagagttc caaaccactt agggccatac agttctttga
     1921 ggggactaga ccagttccca gcacccatgc tggatggttc acagttgctt ttagctccag
     1981 ctcctccaag gacctcaggg tgcctgcact cactgcacag gcacaagcat taacataatt
     2041 aaaaataaaa cctgctggat ggtt
//
