LOCUS       NM_001414043            2006 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus Yip1 domain family, member 3 (Yipf3), transcript
            variant 2, mRNA.
ACCESSION   NM_001414043
VERSION     NM_001414043.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Prost,S., LeDiscorde,M., Haddad,R., Gluckman,J.C., Canque,B. and
            Kirszenbaum,M.
  TITLE     Characterization of a novel hematopoietic marker expressed from
            early embryonic hematopoietic stem cells to adult mature lineages
  JOURNAL   Blood Cells Mol Dis 29 (2), 236-248 (2002)
   PUBMED   12490290
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116739.13.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.816745.1,
                                           SRR17784647.1033253.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               AC116739.13        45373-45608         c
            237-434             AC116739.13        44663-44860         c
            435-541             AC116739.13        44416-44522         c
            542-587             AC116739.13        43245-43290         c
            588-680             AC116739.13        43039-43131         c
            681-812             AC116739.13        42776-42907         c
            813-899             AC116739.13        42501-42587         c
            900-1023            AC116739.13        42214-42337         c
            1024-2006           AC116739.13        41153-42135         c
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..2006
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="Yip1 domain family, member 3"
                     /db_xref="GeneID:28064"
                     /db_xref="MGI:MGI:106280"
     exon            1..236
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..1172
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein YIPF3; killer lineage protein 1; YIP1 family
                     member 3; natural killer cell-specific antigen KLIP1"
                     /codon_start=1
                     /product="protein YIPF3 isoform 2"
                     /protein_id="NP_001400972.1"
                     /db_xref="GeneID:28064"
                     /db_xref="MGI:MGI:106280"
                     /translation="MATPAAPASGVRNGAGPEWGGFEENIQGGGSAVIDMENMDDTSG
                     SSFEDMGELHQRLREEEVDADAAAAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQA
                     SRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKVAGELYGPLMLVFTL
                     VAILLHGMKTSDTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLAL
                     LGYGLFGHCIVLFITYNIHLHALFYLFWLLVAVLVSRTVGPTQRLLLCGTLAALHMLF
                     LLYLHFAYHKVVEGILDTLEGPNIPPMQRVPRDIPAVLPAARLPVAVINATAKAIAVT
                     LQSH"
     exon            237..434
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            435..541
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            542..587
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..680
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            681..812
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            813..899
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1023
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..2006
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1453..1458
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="hexamer: ATTAAA"
     polyA_site      1475
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="major polyA site"
     regulatory      1986..1991
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
                     /note="hexamer: AATAAA"
     polyA_site      2006
                     /gene="Yipf3"
                     /gene_synonym="C6orf109; D17Wsu94e; KLIP1"
ORIGIN      
        1 aagtggggcc aaacatccgg gtttctccct tcggcgtccc ggcggatccc caccttgccc
       61 gggcggtcgc ccctctgaac ctctccctcc ctcggacccg ggtcgcacgc tcttcccacg
      121 cgcgcgtgct ccagcgacgg gaagcctcga gggacatggc gactccggcg gcgccggcca
      181 gcggcgtccg aaatggtgct ggcccggaat ggggaggctt cgaagaaaac atccagggtg
      241 ggggttcggc tgtgattgat atggagaaca tggacgatac ctcaggctcc agcttcgagg
      301 acatgggtga gctgcaccag cgcctgcggg aggaagaagt agatgctgat gcagctgctg
      361 cagaagaaga ggatggggag tttcttggca tgaaaggctt taaaggacaa ctgagccggc
      421 aggtagcaga tcagatgtgg caggcaggga agagacaggc ttccagggcc ttcagcttgt
      481 atgccaacat tgacatcctc agaccctact ttgatgtgga gcctgcccag gtccgaagca
      541 ggctcctgga gtccatgatc cctatcaaga tggtcaactt cccccagaaa gtcgcgggcg
      601 agctctacgg accgctcatg ctggtcttca cactggtggc catcctcctg catggaatga
      661 agacttctga caccattatc cgggagggca ccctcatggg cacagccata ggcacctgct
      721 ttggatactg gctgggtgtc tcgtccttca tttatttcct tgcctacctg tgtaacgccc
      781 agatcaccat gctacagatg ttggcactgc tgggctacgg cctcttcggg cactgcatag
      841 tcctgttcat cacctataac atccaccttc atgccctctt ctacctcttc tggctgctgg
      901 tggcagtgtt ggtgtcgcgg actgtgggcc ctactcagcg gctgctgctc tgtggcacgc
      961 tggctgccct gcacatgctc ttcctgctct atctgcactt cgcctaccac aaagtggtgg
     1021 aggggatcct ggacaccctg gagggcccca acatcccacc catgcagagg gtccccagag
     1081 acatccccgc tgtgctccct gctgccaggc tgcccgtcgc tgtgatcaat gctaccgcca
     1141 aggcaatagc agtgactctg cagtcacatt gaccctctct gaaatcctcg gcctgccctg
     1201 acccccagct ccggggcaga ggaagattaa aggacagtac tgaggatgtg tgtgcccagg
     1261 tctgcagcca ccaggctgtg gctgcctaaa cacctgctgg gcaccaggct tggcttctga
     1321 agggcacaag accaggaact cacagctagg actgcaagtc tctgcagcca agtgcagaat
     1381 atgggtcagc tcttctgagg ccctcacccc ctttctctct actccccttc tgtcctaaat
     1441 atagacttgg taattaaaat actgattgaa gtctagacct gtagctcctg ttggcagcca
     1501 tcctcctgcc acccgttctg atgcccatta ctgccccaca gagcagtggg taggcagccc
     1561 acagtcctca tgtataatgc taggctggct gtccttttga gaggccaggg caacaatgac
     1621 aaatttccac ttacatcatt acaaagaccc ctgtgctatc atgagagaat gtccccatca
     1681 gctgacattt gaagctaagc atggtctaag tgttagtgac cagcaccctt taacctccac
     1741 ggaaggaaat ccaggccaag tgtacattgc ttttcatcgc agcaggtgca caggaacatg
     1801 gatcttcaag gccaacccag tcaacagagt tccaaaccac ttagggccat acagttcttt
     1861 gaggggacta gaccagttcc cagcacccat gctggatggt tcacagttgc ttttagctcc
     1921 agctcctcca aggacctcag ggtgcctgca ctcactgcac aggcacaagc attaacataa
     1981 ttaaaaataa aacctgctgg atggtt
//
