LOCUS       NM_138303               2177 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus Yip1 domain family, member 2 (Yipf2), transcript
            variant 1, mRNA.
ACCESSION   NM_138303
VERSION     NM_138303.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163748.6.
            
            On Mar 26, 2011 this sequence version replaced NM_138303.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. Variants 1, 2, 3, 5 and 6 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC002282.1, SRR11927937.4387187.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-304               AC163748.6         213557-213860       c
            305-462             AC163748.6         213090-213247       c
            463-543             AC163748.6         212929-213009       c
            544-631             AC163748.6         212456-212543       c
            632-748             AC163748.6         211385-211501       c
            749-915             AC163748.6         211140-211306       c
            916-1098            AC163748.6         210875-211057       c
            1099-2177           AC163748.6         209711-210789       c
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 7.83 cM"
     gene            1..2177
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /note="Yip1 domain family, member 2"
                     /db_xref="GeneID:74766"
                     /db_xref="MGI:MGI:1922016"
     exon            1..304
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             274..1212
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /codon_start=1
                     /product="protein YIPF2"
                     /protein_id="NP_612176.1"
                     /db_xref="CCDS:CCDS22907.1"
                     /db_xref="GeneID:74766"
                     /db_xref="MGI:MGI:1922016"
                     /translation="MAAADELAFHEFEEATNLLAETPDAATTSQSDELTSREHVAVVV
                     GSGIGYGAEVGEEEDDKTSLLQEEKPQPRFWTFDYYQSFFDVDTSQVLDRIKGSLLPH
                     PGHNFVRHHLRNRPDLYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVT
                     IAGITIYCYAWLVPLALWGFLRWRQGTRERMGLYTFLETVCVYGYSLFVFIPTVVLWL
                     IPVQWIQWLFGALGLALSAAGLVFTLWPVVREDTRLVAAALLSTVVLLHALLALGCKL
                     YFFQPLPLDHVVPAPQATPPSPNVLLPSSIQPMTTS"
     exon            305..462
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            463..543
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            544..631
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            632..748
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            749..915
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1098
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..2177
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1429
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /note="major polyA site"
     polyA_site      1772
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
     regulatory      2156..2161
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2177
                     /gene="Yipf2"
                     /gene_synonym="1300010K09Rik"
                     /note="major polyA site"
ORIGIN      
        1 cctaaacgga tgttgccgtt gtgtggagaa gggtgggctc tgaagggaag tcgagcggcg
       61 cgcacgcgca tagagcaata gccacgccag cttaggtagg ctcaggtgag gaaggtgggg
      121 tgcatctgaa gggacccagc ttggagctga agttccattc cgtgtattag gctccatgca
      181 ggagtccaga cggaagcatc agtcttgggg agggctgtgg gattgatgcg gttctgtcca
      241 cagagtgcga tgcggtgacg cctctaaaga gtcatggcag cagctgacga actggccttc
      301 cacgagttcg aggaagccac aaatcttctg gcagagaccc cagatgcagc tactactagc
      361 caaagtgatg agctgacctc ccgagagcac gtggctgtgg ttgtgggttc aggcattggc
      421 tatggagctg aagtagggga ggaagaggat gacaagacat cacttctaca ggaagaaaaa
      481 ccacagccca gattctggac atttgactac tatcagagct tttttgatgt ggatacctcc
      541 caggtcttgg acaggatcaa aggctccctg ctgccccatc ctggccacaa ctttgtgcgg
      601 caccatctta gaaaccgtcc cgacctatat ggccccttct ggatctgtgc taccctggcc
      661 tttgtcctgg cagttactgg caatctcact ttggtgcttg cacagagacg ggacccctcc
      721 attcactaca gcccccagtt ccacaaggtg accatagcag gcatcaccat ctactgctat
      781 gcgtggctag tgccgctggc gctgtggggc ttcctgcggt ggcgtcaggg cacgagggag
      841 cgcatggggc tgtacacctt cctggagaca gtctgtgtct acggctactc actctttgtc
      901 ttcatcccta ctgtggtcct gtggcttatc ccagtgcagt ggatacagtg gctctttgga
      961 gccctgggcc tggccttgtc agcagccggg ctggtattca cactgtggcc tgttgtccga
     1021 gaggatacac ggctggtggc tgcggcacta ttgtctactg tggtgctgct tcacgccctc
     1081 ttggcgctag gctgtaagct gtacttcttc cagccactgc ctctggacca tgtggtgcca
     1141 gcaccccaag ctacacctcc atctcccaat gtcctgctgc ccagttcaat ccagcccatg
     1201 acaacctcct aggaaggctc ataggtgagg gaccagtttc tgtgttggtt gaggatgtac
     1261 cctcctcctg ggaccattcc taggagtctt tctttttcag gccaaactca aggggatact
     1321 acttgtcctg ccctccctat gaagatggga ggattcttgg accctggaga ctaccctgct
     1381 gttttgcagg cttttcttac aaagcaaaca cttttatttt ctatgcaaag gtgatccaga
     1441 gaatttatat aaaggtgggg gaggggcagc cgagcaagga gtattactga tggacaggag
     1501 agagcctggt tcccagctgc ctgagggccc tctgattccc tgacaggtca ggagggtggc
     1561 acagagcagc tccagccttt gccaaggggt tcctgtggca ggctgtggcc attgaggtgg
     1621 ggactctagg gtaagggaat aggggaaact gcctgtgctt attaatcacc cttccttctt
     1681 tgcttttctt cttgtctggg gaggtccctg cgaggctcct tcccagggtt gctgtcttga
     1741 gaggattaag tagaacatga atgtgaacgc aacacacagg cctatgttag ctatcaggag
     1801 aggacgcctt ccttgtgtgt gtgtgacaga tctttgaggt ttcttgtctg ccccagtagc
     1861 ccagggtgac acactctggg ctgcctgttc aagcttttga tggagggggg ccttcagggc
     1921 tcaggacagg acagtagcag aaagtaggga ctaggccttt ggacagctgg gtggtttgta
     1981 cattcaagtt tgaggtgaac cctttggtgg gagggggctg tgcccactct gaaggcttga
     2041 cagggccacc cctcacctag aacctctggg cctaggaaca ggggctgctg gcttggcccg
     2101 gccagccggg tttctcagag ggtctgtggg ttgacactgg ttcttttcgt aaaaaaataa
     2161 aattaaaaaa agcagca
//
