LOCUS       NM_145550               1333 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus Yip1 domain family, member 1 (Yipf1), transcript
            variant 1, mRNA.
ACCESSION   NM_145550
VERSION     NM_145550.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1333)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1333)
  AUTHORS   Adissu,H.A., Estabel,J., Sunter,D., Tuck,E., Hooks,Y.,
            Carragher,D.M., Clarke,K., Karp,N.A., Newbigging,S., Jones,N.,
            Morikawa,L., White,J.K. and McKerlie,C.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Histopathology reveals correlative and unique phenotypes in a
            high-throughput mouse phenotyping screen
  JOURNAL   Dis Model Mech 7 (5), 515-524 (2014)
   PUBMED   24652767
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY204210.1, AK081205.1 and AI303400.1.
            
            On Mar 26, 2011 this sequence version replaced NM_145550.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK157536.1, AK081205.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                BY204210.1         1-14
            15-1320             AK081205.1         2-1307
            1321-1333           AI303400.1         1-13                c
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.18 cM"
     gene            1..1333
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /note="Yip1 domain family, member 1"
                     /db_xref="GeneID:230584"
                     /db_xref="MGI:MGI:1915532"
     exon            1..100
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            101..180
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             150..1070
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein YIPF1"
                     /codon_start=1
                     /product="protein YIPF1 isoform 1"
                     /protein_id="NP_663525.1"
                     /db_xref="CCDS:CCDS18437.1"
                     /db_xref="GeneID:230584"
                     /db_xref="MGI:MGI:1915532"
                     /translation="MAAVDDLQFEEFGDGATLLAANPDATTINIEDPSVSFGHQPRPP
                     GSVGREEDEELLGNNDSDETELLAGQKRSSPFWTFEYYQTFFDVDTYQVFDRIKGSLL
                     PVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFQK
                     VSIAATVIYAYAWLVPLALWGFLLWRNSKVMSMVSYSFLEIVCVYGYSLFIYIPTAVL
                     WIIPQRVVRWVLVMIALGVSGSVLVMTFWPAVREDNRRVALATIVTIVLLHVLLSVGC
                     LAYFFDAPEMDHLPAAITTPNQTVTAAKSS"
     exon            181..344
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            345..425
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            426..513
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            514..630
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            631..797
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            798..980
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1105
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1322
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1299..1304
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      1322
                     /gene="Yipf1"
                     /gene_synonym="C030002N13Rik"
                     /note="major polyA site"
ORIGIN      
        1 tcccccggat ctccggcttc cgggattgga ctgaccggct accagtgcag agcatcccag
       61 gccccaacct ttcctggaca gttggacctc ttcctgagag accccggaac gttttctacc
      121 ttacccttgg gagaagagcc tctggctgaa tggcagctgt ggatgactta cagtttgaag
      181 aatttggcga tggagctaca ctgttagcag caaatccaga tgctaccacg ataaacattg
      241 aggaccccag tgtatctttt ggccaccaac ccagaccccc cgggagcgtg gggcgagaag
      301 aggatgagga gctgctgggg aacaacgact ctgacgagac cgagttactt gccggtcaga
      361 agcgaagctc tcccttctgg acattcgaat actatcagac attctttgat gtggacactt
      421 accaggtctt tgacagaata aaagggtccc tgctgccggt tcctggaaag aactttgtga
      481 ggctgtacat ccgcagcaat ccagatctct atggtccctt ttggatatgt gccacgttgg
      541 tctttgccat agcaattagt gggaaccttt ctaacttcct aatccatctg ggagagaaga
      601 cataccatta tgtgcccgaa ttccagaaag tgtctatcgc agcgactgtc atctatgcct
      661 atgcctggct ggtccctctg gccctctggg gcttcctcct gtggagaaac agcaaagtga
      721 tgagcatggt ttcctattcc tttctggaga tcgtgtgtgt ctacggctac tcgctgttca
      781 tctatatccc cacagcagtc ctgtggatca ttccccagag ggttgttcgt tgggtccttg
      841 tcatgattgc cctgggcgtc tcaggctctg tgttggtaat gacattttgg ccagctgttc
      901 gtgaggataa ccggcgtgtc gccttggcca ccattgtgac aatcgtgttg cttcatgtgc
      961 tgctctctgt gggctgcttg gcttacttct ttgatgctcc agagatggac cacctcccag
     1021 cagctataac cactcccaac cagacagtaa cagcggccaa atccagctaa tggggaaagc
     1081 aggtggtggc atttcatctc tcaggctctc taactgatgg ggagttatgg ctcttctgga
     1141 cacagcatcc actactggaa tgcagaatgg ccagcatcag caggaaactg attgtcctgg
     1201 ccctgaaacc ccatcaccca tctatcaaga attaagtgtt ggtctggggg tatcaggcac
     1261 gtgatagaac acttgcctcg catgtgtggg gccctgaaag taaagtgcag tgataatgct
     1321 taaaaaaaaa aaa
//
