LOCUS       NM_026553               1493 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus Yip1 interacting factor homolog A (S. cerevisiae)
            (Yif1a), mRNA.
ACCESSION   NM_026553
VERSION     NM_026553.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1493)
  AUTHORS   Barone,V., Mazzoli,E., Kunic,J., Rossi,D., Tronnolone,S. and
            Sorrentino,V.
  TITLE     Yip1B isoform is localized at ER-Golgi intermediate and cis-Golgi
            compartments and is not required for maintenance of the Golgi
            structure in skeletal muscle
  JOURNAL   Histochem Cell Biol 143 (3), 235-243 (2015)
   PUBMED   25208654
REFERENCE   3  (bases 1 to 1493)
  AUTHORS   Gisler,S.M., Stagljar,I., Traebert,M., Bacic,D., Biber,J. and
            Murer,H.
  TITLE     Interaction of the type IIa Na/Pi cotransporter with PDZ proteins
  JOURNAL   J Biol Chem 276 (12), 9206-9213 (2001)
   PUBMED   11099500
REFERENCE   4  (bases 1 to 1493)
  AUTHORS   Matern,H., Yang,X., Andrulis,E., Sternglanz,R., Trepte,H.H. and
            Gallwitz,D.
  TITLE     A novel Golgi membrane protein is part of a GTPase-binding protein
            complex involved in vesicle targeting
  JOURNAL   EMBO J 19 (17), 4485-4492 (2000)
   PUBMED   10970842
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124502.4, AK077329.1 and AK002259.1.
            
            On Mar 26, 2011 this sequence version replaced NM_026553.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK160409.1, AK077329.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                AC124502.4         35036-35050         c
            16-1470             AK077329.1         2-1456
            1471-1493           AK002259.1         876-898
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 4.24 cM"
     gene            1..1493
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /note="Yip1 interacting factor homolog A (S. cerevisiae)"
                     /db_xref="GeneID:68090"
                     /db_xref="MGI:MGI:1915340"
     exon            1..211
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..1062
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /note="putative transmembrane protein; homolog of yeast
                     Golgi membrane protein Yif1p (Yip1p-interacting factor)"
                     /codon_start=1
                     /product="protein YIF1A"
                     /protein_id="NP_080829.1"
                     /db_xref="CCDS:CCDS29450.1"
                     /db_xref="GeneID:68090"
                     /db_xref="MGI:MGI:1915340"
                     /translation="MAYHSAYGVHGSKHRTRAAPDPPPLFDDTSGGYSSQLGGYPAPG
                     ADVAFSVNNLLGDPVANMAMAYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYV
                     AKKLGLLVFPYTHQNWKMQYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQ
                     QRFSPEVLGLCASTALVWVFMEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILS
                     VLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTAASGPDSMGGPAPRQRLQLYLTLGA
                     AAFQPLIIYWLTFHLVR"
     exon            212..423
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            424..528
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            529..607
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            608..665
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            666..821
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            822..915
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1493
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1119
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
                     /note="major polyA site"
     polyA_site      1474
                     /gene="Yif1a"
                     /gene_synonym="5330422J23Rik; 54TM; Yif1; Yif1p"
ORIGIN      
        1 ggtagacagc gaagtgtgac gccaaggaca tggcggccgc gatcggacag ccctgggacg
       61 tgtcgggccg tcgggtaact tcggtcagga ccaggcaaga gaagtagctg tttcagtagt
      121 gttcgtaccc acgactcagc gaagtaccca cgacccttgg gtagagcgaa cgtcacggcc
      181 atggcttacc attcggcata tggagtccac ggttccaagc ataggacccg ggcagctcca
      241 gaccctcctc cactcttcga tgatacaagt ggtggttatt ccagccaact gggcggatac
      301 ccagccccag gagctgatgt agccttcagt gtcaacaacc tgcttggaga cccagtggcc
      361 aatatggcaa tggcctatgg cacctccata gcatcccaag ggaaggacat agtgcacaaa
      421 gagctgcacc gttttgtgtc cgtgaacaaa ctcaagtatt tttttgctgt ggacacagcc
      481 tatgtcgcta agaagctagg gctattggtc ttcccataca cacatcagaa ctggaaaatg
      541 caatacagcc atgatgtgcc tctgcccccg cggaaagatc tcaatgcccc tgacctctat
      601 atccccacca tggccttcat cacatacgtg ctgctggctg gaatggcgct aggcattcag
      661 caaaggttct ccccagaggt gttgggcctg tgtgcaagca cagcactggt gtgggtgttc
      721 atggaggtgt tggctctgct tctgggcctc tacctggcca ccgtacgcag tgaactgagt
      781 accttccacc tcttggctta cagcggttac aaatatgtgg ggatgatcct tagtgtgctc
      841 acggggctgc tcttcggcag tgatggctac tacgtggccc tggcctggac atcatctgcg
      901 cttatgtact tcattgtacg atctttgcgg actgcagctt caggccctga cagcatgggg
      961 ggcccagccc ctcggcagcg tctccagctc tacctgaccc tgggagcagc tgccttccag
     1021 cccctcatca tatactggct gaccttccac ctggtccggt gatccctggt ccttaggtgg
     1081 cactcatttt tccatacatt gaagatttgg tttccttaac ttggcttgac cctggttcct
     1141 gggacctgag gggaagccat aggtatctgc tttgcccagg ggactaggct tcaggcttct
     1201 aagagaaggg taagcggatt ctgggagagc atcctcgagg catcttttat actgctttga
     1261 aaaacagctg gaagggtcgc atcggacaca gctggaaagg gaagatggaa gggtggctac
     1321 aaggagactt ccaaggcttc agattcatcc gagagggttc cagaaaagcc cagagcaagt
     1381 agggcaaggc tcacagtgct ggggtttagc tctgggttgt cacctctaga atattccacc
     1441 taaccctatg tgttcaagcc ttccagaagc agaattgggg cttgtgtgtt ttc
//
