LOCUS       NM_026940               1320 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus YdjC homolog (bacterial) (Ydjc), transcript variant 1,
            mRNA.
ACCESSION   NM_026940 XM_148046 XM_358772
VERSION     NM_026940.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1320)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1320)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154667.2, AK007503.1 and AI642588.1.
            
            On Mar 24, 2011 this sequence version replaced NM_026940.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK007503.1, BC115584.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                AC154667.2         116584-116595
            13-1253             AK007503.1         2-1242
            1254-1320           AI642588.1         2-68                c
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 10.63 cM"
     gene            1..1320
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /note="YdjC homolog (bacterial)"
                     /db_xref="GeneID:69101"
                     /db_xref="MGI:MGI:1916351"
     exon            1..180
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..949
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0249 protein ydjC homolog; carbohydrate deacetylase"
                     /codon_start=1
                     /product="carbohydrate deacetylase isoform 1"
                     /protein_id="NP_081216.1"
                     /db_xref="CCDS:CCDS27996.1"
                     /db_xref="GeneID:69101"
                     /db_xref="MGI:MGI:1916351"
                     /translation="MAFPRVRLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGT
                     AAESAAELARRHSIPTGLHANLSEGRPVGPARHNASSLLSPEGFFLGKMGFREALAAG
                     DVALPQVREELEAQLSRFRELLGRSPTHVDGHQHVHVLPGVCQVFAEALQAYGVRFTR
                     LPAERGVGSCAWLEAPARAFACTVERDARAAIGPFSRHGLRWTDAFVGLSTCGRHMSA
                     HRVLGSLARALEDIPAGHALTAELMAHPGYPSVPPAGGCGEGPDAFSCSWERLHELHV
                     LTAPTLRAWLAQNGVQLCAIDDLDSKRPGEGVPL"
     exon            181..340
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            341..440
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            441..618
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            619..1320
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1289..1294
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1309
                     /gene="Ydjc"
                     /gene_synonym="1810015A11Rik; 4930521M19Rik"
                     /note="major polyA site"
ORIGIN      
        1 ccagggtttg gcagccatgg cttttccccg cgtgcggctg gttgtcaccg ctgatgactt
       61 tggttattgc ccgcggcgcg atgagggcat cgtagaggcc ttcctggcag gaactgtgac
      121 cagcgtgtca ctgctggtta acggcacagc cgcagagagt gcggccgagc tggcccgcag
      181 gcacagcatt cccacgggtc ttcacgccaa cctgtctgag ggccgtccgg tgggcccggc
      241 ccgccacaac gcctcgtcgc tcctcagccc cgaaggcttc tttctcggca agatgggatt
      301 tcgggaggct ttagcggctg gagacgttgc tttgccccag gtgcgggagg aactagaagc
      361 tcaactcagc cgcttccggg agttgctggg caggtccccc acgcacgtgg acggtcacca
      421 gcacgtgcat gtgcttccag gcgtgtgtca ggtgttcgcc gaggcgctgc aggcgtacgg
      481 ggtccgcttc acacggctgc cggcagaacg tggcgtgggc agctgcgcgt ggctcgaagc
      541 gccagcgcgc gccttcgcct gcacggtgga gcgcgatgcc cgggccgcaa ttggcccctt
      601 ctctcgccac ggcctgcggt ggaccgatgc ctttgtgggc ctgagcactt gtggccggca
      661 tatgtcagct caccgagtct tggggtcact ggcgcgggcc ctggaagata tccctgctgg
      721 ccacgccctg actgccgagc tgatggcaca tcccggatac cccagtgtgc ctccagcagg
      781 gggctgcggt gagggcccag atgcgttctc ttgttcttgg gagcggctgc atgagctgca
      841 cgttctcaca gcacccactt tgcgggcttg gctggcccaa aatggtgtgc agctctgcgc
      901 cattgatgac ctggattcca aaaggcctgg ggaaggggtc cccttgtgag gcaactctgg
      961 aacctttcct ggagccttcc tcactcagac accgaaggcc agctacaaac tgcctaaaac
     1021 tatggaggaa ggccaaggct aaagttccag ttcagtcagg ccttggagca gggtctgact
     1081 tcctagagtg aaaagccact aaatcctgtt tccaggtcct ctaggctgag tagtgagtag
     1141 taggccgacc ttgggcagcc ttacctggct gcagggaggc ccagtctgtg acatctggac
     1201 gtaaggacag ctgagcgatt atttggtgcc agttcgtgtt gtagttacaa ccacttgttt
     1261 aagagcaatg ggaagaggct ggtgtgttaa taaaataatg tctttcagat ttggctggtt
//
