LOCUS       NM_025904               3436 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus Yae1 domain containing 1 (Yae1d1), mRNA.
ACCESSION   NM_025904
VERSION     NM_025904.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3436)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3436)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ084672.1, AK005425.1 and CT009754.11.
            
            On Dec 18, 2009 this sequence version replaced NM_025904.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005425.1, SRR10223969.12454.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                CJ084672.1         1-14
            15-1241             AK005425.1         2-1228
            1242-3436           CT009754.11        174584-176778       c
FEATURES             Location/Qualifiers
     source          1..3436
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 6.05 cM"
     gene            1..3436
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /note="Yae1 domain containing 1"
                     /db_xref="GeneID:67008"
                     /db_xref="MGI:MGI:1914258"
     exon            1..171
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..696
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /codon_start=1
                     /product="protein YAE1 homolog"
                     /protein_id="NP_080180.1"
                     /db_xref="CCDS:CCDS26256.1"
                     /db_xref="GeneID:67008"
                     /db_xref="MGI:MGI:1914258"
                     /translation="MSWFRAAPENASPGDQDVFDEEADESLLAQREWQGHMRKRVQEG
                     YRDGLDAGKALTLQRGFNQGYKEGADVIINYGLLRGTLSALLSWCHLHGNSSTLISKI
                     SNLLDTVDQCEECVLRRLKSVTSQPRVTDLLDAIEDMDLCHVVPSDQAKGDSNAEINT
                     DSDSPNGMGCSHPEHCRPKEHAHLEKPSLSWILEQTSSLVKQLGVPADILQHLRQL"
     exon            172..293
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            294..3436
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3101..3106
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3120
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
     regulatory      3408..3413
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3433
                     /gene="Yae1d1"
                     /gene_synonym="1600012F09Rik"
                     /note="major polyA site"
ORIGIN      
        1 ttgcccgggt ttccggcggc tccgggactc gtggtgttcc gggcgatgtc ttggtttcga
       61 gcggctccgg agaacgcgag ccctggagac caggacgtgt ttgacgagga agcggacgag
      121 tctctgttag cgcagcggga atggcagggt cacatgcgga aacgagtcca agagggttac
      181 agagatgggc tagatgccgg caaagcactt actcttcaac ggggcttcaa tcaagggtac
      241 aaagagggtg cagacgtcat tataaactat ggactcctta gaggaacact gagtgctttg
      301 ctttcctggt gtcaccttca tggtaatagt tcgactctga tcagtaagat aagtaacctc
      361 ctggacacag ttgaccagtg tgaagagtgt gtgctcagac gtctgaaatc ggttacatca
      421 cagccacgag ttacggattt attggacgcc attgaggata tggacctttg tcacgtagtt
      481 ccgtcagacc aagcgaaagg tgacagtaac gctgagatta acaccgattc tgacagtcca
      541 aatgggatgg gttgttcaca tccagaacat tgtagaccaa aagagcatgc acatttggaa
      601 aaaccaagcc tctcttggat tctggagcag acatccagtt tagtgaaaca gctgggagta
      661 ccggcagaca tattacagca cctgagacaa ctataaaatt acctccccat ttctagtgga
      721 agtaatgctc agttattact tagagcattg tgttctggat aaggtaacgc tgattgaacg
      781 aacacttccc ctgtagttac cctttgtgga cggaattgtt aagggtcttc agtattaaca
      841 ctagtaaatg gaatgacatt ggtaaattgt ttagttttag atacactcag aaatccttgt
      901 cattttcaaa tttctaatca aaatcaatca tttttagact agcaaaagcc aagcatttta
      961 gaacaaggaa aataaaatct aatgctgctt tctgcttttg ttggaatcag ggcctcttca
     1021 ccagcaagca agccagagtt gccagaagta acctgaaagc tagcataaat aaggagaagc
     1081 agatctatag atagctatac attaaagtca agagactgta gaaactgaca caatatttat
     1141 attattgaat gaataataaa aagcaaagta ctaaaactga cctatttatg tatttatgat
     1201 taaagatgtt caatttcatg aaaaaaattg aaaaaaaaaa acagtttgtg ctaaactgta
     1261 aagaaatgaa actacttagc attctaggta atgaggactt ggccacattt tctcaaactg
     1321 taacaaacta tttctgtctg aactgcaatt ttacttgtta tttacattgg gatttttaaa
     1381 aagggcaaaa aacagtactg ctttgacagg aacgaaatgc ataatctagc atagacagac
     1441 tcacagtcag atttttgttc catgacccag gatcgggaaa ggagtttttc atcacttttc
     1501 cccacctgaa gttaatatac aacgcctgac tgagagccat ccaggtaatt accccttact
     1561 gacagcttcg gttgctgtct aaccagtatt tagctgtgct gaaagatgca ttcctgagag
     1621 actggctgga ggaccttgta aaggcccctg gtttcagtcc ctgcttaaaa cgcacagaac
     1681 attaagagat tgtgtcagca gaatttgaaa tagtgttgta gatatactaa ttcatgcttc
     1741 aagtatcaaa gtaacatttg atggctgggt ttttatttta aaacctcgtg gtactaggga
     1801 ttgaacctag gaccttttga acaattccca tattgaaatg tcaaacccac agaatattaa
     1861 agtctttcaa gtgtcagtgt tgctctacat tgtattttct atagacataa ccatctctaa
     1921 cagtgatagc cactcttaag atttgaatgt aatcttgaga tttttgtcta gatataacct
     1981 gataagattc tctaaatgga aaatcccttg ccatcattac ttgcgtaaag tatcattaca
     2041 ctaaaagtca cagaagatga agttgggtat tagctgtgag agctagaggg gtggctcagt
     2101 agctaaaagc atctgctgca cacctactat ccacttcaaa attaaatgtg gtcccaagca
     2161 tacattaacc ccaggggctt gggggacctg gaagattgca ggcacttgct ggcttgcccc
     2221 agggagagtt tgtaagatgc tgagtgaccc tgcccccgag ttatttctga ttggtaaata
     2281 aagaggcctg ctgagtggaa gagacataag tggggtttag gtttcatgga cttggtgtca
     2341 gaggagaacc atgaggggaa gaagagtaca aaaagtgtgg tccttagagc tagccaattg
     2401 aagtttaaaa tagcccaaat aaaacctcat acataataac tcagggttat caataaataa
     2461 attttaacaa catagaggat agacaactgc tcagctttta tactgtttaa gtcttataaa
     2521 tatctaaaaa ataaatggtc taaggcaaga taaattcctg gagacatagt ttctacaaca
     2581 cagaggttgc tagggggacc tctgatgccc tctatcttct gtgtgtgcaa gcaaagacat
     2641 atacccatac accacacaca aaaggctgtt ggcttagggg gagaaactct cttgcttttt
     2701 caaaaagttc tagagtagtt caaccagaaa cagtaaagga gaatctactt gactgttgcc
     2761 ttttgctttg ctttctatgc tgggaggcag ccaggtctca tgaagaggcc ctaggtgaat
     2821 gtagatggga aggcaagggt gccctgcagc tgtgaccaga gtgtcatggc ctgagattgc
     2881 atctgaagta agttacttat ggcactgaca catctagatc tttttaagca aatatggaag
     2941 gggggctttc ctgacactta agtcattaga actactaagg ccaccaaatt atgatttgca
     3001 gagtaagtag ccagctgaat taatctacaa gcatctttat ttgcagccat gcaccacttg
     3061 ctggggatag attttgagaa atgtaacccc ggggagttcc attaaacaaa tataaaaata
     3121 tataaagtgt ttatgatgtc acaaagagat ggggccttat gggaccatat tatatctcat
     3181 ttttggccaa aacataacta ggtggcacaa tgactatctg ccaaagtgct tgctaactgc
     3241 tttcatggta aacccagata aagaccaaat tgtgattctc accctattca cagtaaggtt
     3301 tttattgctt tgtgctctag tctaagacct aggggaaata gttacatgtg tgtgtgtgtc
     3361 tttaacttaa tttttttaaa ttattcccaa gtttggccag tagatgaaat aaacatatgc
     3421 tgttcataaa ctacca
//
