LOCUS       XM_006517043            1559 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus X-ray repair complementing defective repair
            in Chinese hamster cells 4 (Xrcc4), transcript variant X2, mRNA.
ACCESSION   XM_006517043
VERSION     XM_006517043.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006517043.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..1559
                     /gene="Xrcc4"
                     /gene_synonym="2310057B22Rik"
                     /note="X-ray repair complementing defective repair in
                     Chinese hamster cells 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 244 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:108138"
                     /db_xref="MGI:MGI:1333799"
     CDS             135..1115
                     /gene="Xrcc4"
                     /gene_synonym="2310057B22Rik"
                     /codon_start=1
                     /product="DNA repair protein XRCC4 isoform X1"
                     /protein_id="XP_006517106.1"
                     /db_xref="GeneID:108138"
                     /db_xref="MGI:MGI:1333799"
                     /translation="MERKVSRIYLASEPNVPYFLQVSWERTIGSGFVITLTDGHSAWT
                     ATVSELEISQEADDMAMEKGKYIDELRKALVPGSGAAGTYKFLFSKESRHFSLEKELK
                     DVSFRLGSFNLDKVSNSAEVIRDLICYCLDTITEKQAKNEHLQKENERLLRDWNDVQG
                     RFEKCVSAKEALEADLYQRFILVLNEKKTKIRSLHKLLNEVQQLEESTKPERENPCSD
                     KTPEEHGLYDGSTDEESGAPVQAAETLHKDDSIFSSPDVTDIAPSRKRRHRMQKNLGT
                     EPKMAPQELPLQEKERLASSLPQTLKEESTSAENMSLETLRNSSPEDLFD"
ORIGIN      
        1 gtttgcacac tctacatccg gggcttagac gttctaggcc gtggggagag ggaaagaact
       61 ctgtggtagc tactggaaag gaacggccca ttcccgaggg gattatttgg ctagtataaa
      121 accagtagcc agaaatggaa aggaaagtaa gcagaatcta tcttgcttct gaacccaacg
      181 taccttattt tctgcaagtg tcttgggaga gaacaatagg atccggcttt gttattacac
      241 ttactgacgg ccattcagcc tggactgcaa cagtttctga attggagatt tcccaagaag
      301 ctgatgacat ggctatggag aaaggaaaat acattgatga gctgagaaag gcactggtgc
      361 cagggtcagg agcagctggt acatacaagt tcctcttttc taaggagtct cggcatttct
      421 cccttgagaa agaactgaaa gatgtttcat tcagacttgg ttccttcaac ctagacaaag
      481 tttcaaactc agctgaagtc ataagagatc tcatttgtta ctgcctggac accattacag
      541 aaaagcaagc caaaaacgag cacctgcaga aagaaaatga aaggctcctg agagactgga
      601 atgatgttca aggccgattt gagaaatgtg tgagtgccaa agaagccttg gaggctgatt
      661 tgtatcaaag atttatcttg gtgctgaatg agaagaaaac aaagatccgg agcttgcata
      721 aattgctaaa tgaagtccag cagctggagg agagtaccaa acctgaaagg gaaaatccgt
      781 gttctgacaa aacacctgag gagcatgggc tttatgatgg aagcaccgat gaagaaagtg
      841 gagcccctgt gcaggctgca gaaactcttc ataaggatga ttccatattt tcaagtccgg
      901 atgtcactga cattgcacca agtaggaaga ggagacaccg aatgcagaag aatcttggga
      961 cagaacctaa aatggctcca caggagttgc cgctacagga gaaggaaagg cttgcctctt
     1021 cactacccca gaccttgaaa gaggagagca cctctgctga aaacatgtct ttagaaaccc
     1081 tgagaaacag cagcccagaa gatctctttg attagatata aaccctagaa aacagcactg
     1141 gtgttcaatg aactatattc tttatccagt tcctttggat gagaagacag gctttcaact
     1201 tagcagccat ggttactatg tcttgcaact ttactatatg tacccaatga atcatactag
     1261 tatgtgacag tcagatggaa tgtcagaggg acacttttct ccctttctta attaaatctg
     1321 agttttgttg caaaaggcac atatatcata tttgtttata catttttgta actttctaat
     1381 tgactcttgg aagattttgg aaatagaaca aaatatcttt aacacttttt tagttgcact
     1441 ttaaattatc tttgttgaag catttaattt atgatgtgac acatataaaa tacatcttta
     1501 tcttgtgtgt aaacagtctg aaatctgata gttaataaaa gtttgtgttc tcaaaagaa
//
