LOCUS       NM_001286689            3264 bp    mRNA    linear   ROD 04-NOV-2020
DEFINITION  Mus musculus Xrcc1 N-terminal domain containing 1 (Xndc1),
            transcript variant 1, mRNA.
ACCESSION   NM_001286689
VERSION     NM_001286689.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3264)
  AUTHORS   Frankenberg S, Schneider NY, Fletcher TP, Shaw G and Renfree MB.
  TITLE     Identification of two distinct genes at the vertebrate TRPC2 locus
            and their characterisation in a marsupial and a monotreme
  JOURNAL   BMC Mol Biol 12, 39 (2011)
   PUBMED   21854574
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC150275.2, AK041300.1 and BC067003.1.
            
            [WARNING] On Sep 6, 2024 this sequence was replaced by
            NM_001286689.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK041300.1, SRR1660821.143307.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-267               AC150275.2         203179-203445
            268-2463            AK041300.1         2-2197
            2464-3264           BC067003.1         2349-3149
FEATURES             Location/Qualifiers
     source          1..3264
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7"
     gene            1..3264
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /note="Xrcc1 N-terminal domain containing 1"
                     /db_xref="GeneID:102443350"
                     /db_xref="MGI:MGI:5546359"
     exon            1..314
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            315..409
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            410..584
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     CDS             540..1757
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /note="XRCC1 N-terminal domain-related"
                     /codon_start=1
                     /product="Xrcc1 N-terminal domain containing 1"
                     /protein_id="NP_001273618.1"
                     /db_xref="CCDS:CCDS72002.1"
                     /db_xref="GeneID:102443350"
                     /db_xref="MGI:MGI:5546359"
                     /translation="MAPVKISHVVSFSSQDPKYPVENLLNPDSHRGPWLSCPQDKTGQ
                     LKVEFQLERAVPISYIDVGNCGCAFLQIDVGRSSWPLDRPFVTLLPATMLMSRTDSKS
                     GKNRSGVRMFKDGDFLTPASGESWDRLRLTCSQPFTRHQSFGLAFLRVRSSLGSLADP
                     VVDPSAPGSSGLNQNSTDVLESDPRPWLTNPSIRRTFFPDPQTSTKEISELKGMLKQL
                     QPGPLGRAARMVLSAARKAPPASVVSPNNSHGEPGPSRAESAEPRAEEPNRKTAVGRR
                     KRRKVQEPRRSLSNSSSQPNRRTGRTRQRQHRPQTKSDDGGVQAAGQCPICAGFFSIE
                     TLPQHAATCGESPPPQPASPASLSSSESVLWVSSPESSPPPSWVQCPICELQFSAREI
                     EEHASVCGEVLPA"
     exon            585..726
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            727..882
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1061
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1147
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1320
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1396
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1524
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
     exon            1525..3246
                     /gene="Xndc1"
                     /gene_synonym="Xndr"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgctgcact gagtccgacc cggaaattta agtcccactc gctaagggcg gactggagcg
       61 tgtaaaaaaa aaagaaaaaa tatatatata cacgcacgcg gggttttgtt attttgtttt
      121 tagatgtagt aactgctgta tttcctcttg gaagtcgtct ttcagaaaaa gcggctcccg
      181 taggactcaa aacccgttcc tacagtagaa aggcttgggg ccagaaggcg gaggtcacgg
      241 aacggaattg gcgggagaat aagatccgga gctccggagc tgaggctacc acgacgtaaa
      301 gtttacgaac tcggcctacc caaagctggg atcatagtcc tagggcacca catccacctc
      361 ggaggaatga aagctatttc aggaagattc cttgaacaga caaagcaagg agtaatataa
      421 agattcttgt tctcccaaaa gctaccaaga gcaaaacatc aacagtacca ccgtggctac
      481 agaagacatc gggggaggaa gcgtgtcttc ctcgcactta aggaagctgg tggcgtccga
      541 tggctcctgt gaagatcagc catgtggtgt cattttcctc tcaggatccc aaatatcctg
      601 tggagaactt gctgaaccca gacagtcaca ggggaccctg gctcagctgc cctcaggaca
      661 agactggaca actgaaagtg gagtttcagc tggagagggc agtgcccata agctatattg
      721 atgttggaaa ctgtggctgt gctttcctac agattgatgt gggtcgttct tcctggcccc
      781 tggacagacc tttcgtcacc ctgctccctg ccaccatgct aatgtcccgc actgactcca
      841 agtcggggaa gaaccgctca ggggtccgga tgtttaaaga tggtgatttc ctgactccag
      901 cctcaggaga gtcctgggat cgacttcgat tgacctgctc ccaacctttc acacgtcatc
      961 agtcctttgg cctggccttc ctacgagtgc gttcctctct gggctctctg gctgaccctg
     1021 tagtagatcc ctcagcccct gggagctctg ggcttaacca gaactctaca gatgtgctgg
     1081 agtctgatcc taggccctgg ctgactaatc cttctatccg gaggacattc ttccccgatc
     1141 cccagacgag caccaaggaa atttcagagc tcaagggtat gttgaagcag ttgcagccag
     1201 ggcctctggg gcgggcagcc cgcatggtgc tttctgctgc ccgtaaggcc cctccagcca
     1261 gtgtggtaag cccaaacaac agccacggag aaccaggtcc cagccgtgca gagagtgcag
     1321 agcccagagc agaagaacca aacaggaaga cggctgtggg cagaaggaag aggaggaaag
     1381 tgcaggagcc aaggagatcg ttgtccaact cgagttctca gccaaatagg aggacaggaa
     1441 ggacaagaca aagacagcac cgacctcaga ccaaaagtga tgacggtggt gtgcaggctg
     1501 ctggacagtg tcctatttgt gcaggtttct tcagtattga gactcttccc cagcatgctg
     1561 caacttgtgg agagagcccc ccaccccagc cagcttctcc tgcctccttg tcttcctcgg
     1621 agtccgtgct gtgggtctcc tccccagaga gctcgccgcc accttcctgg gtccagtgcc
     1681 ctatctgtga attacagttc tcagcaagag aaatagaaga acatgccagc gtgtgtgggg
     1741 aagttttgcc agcctgagca gtgacgttct gttgaccctt tatgttggag cctggggaat
     1801 ggatctctgg tggctaagaa gggttgggtc ccctccctcc agctattact caggactccg
     1861 cctgcctgag aacactgtgg acccagcttg ctccccattc ctgttgtcaa ggctttgtca
     1921 ctatggtacc caattctcaa aggatatttt ccccttagaa cttctttggt agaattgatg
     1981 atctctccaa ggccttagga tactatctag aatgtgttac ctaatgccca ttttcctgaa
     2041 tgaaaaactg aggctcagtc agggggaaat aatggctggg aattataaag ttatgctgtt
     2101 tgggaagatg agtgaatgag tcttgagtgt gaaactaacg agttccatat gaccttgacc
     2161 ttctgtgttc ttcatgggta tctgtctcag atgtagtcag atgactctga aactttactt
     2221 ctcatgggtg tgaaatggat cttcagtaac atgaaaaccc tcttcctact cacatggttc
     2281 ttaagggagc cagagagatt cctttctaag gagtagatga ttctgggcat ggcttgtaag
     2341 ggtttgagca aatctcattc caactatttg agatagttgg accacagtgt ctcccctgga
     2401 gctgtggtag ttcaattctg ctttaaagaa ttgtgcacgc ttcccttttt ccccaggaga
     2461 cgtcatcatg tggcactaac acccgttccc cttgtcccca aggtacgagg cagggagaga
     2521 gcagctggtc ctgatgaagg gagggcacag ggtggggctt tgggtagaaa taaaagagaa
     2581 tgctaggcac agtcaaggga gaggcagagc tggagttcaa gcattcagcc cctgcccaca
     2641 gaggtgggtg cagccatgga ccccctttcg gtaagagacc cctgctttcc tcccctcttc
     2701 atcccagtcc ccggggatgc agggacagcc tgctgccaga caagtctggg atgctgctgc
     2761 tggtgggaga gccctcggat ccctgatcca gggcctagaa gaaaagagca aagggctggg
     2821 cctggtagaa gaacaggacc aaacactaag gagtagagat gctccccaaa gtagaagaca
     2881 gattgagagc gggtggtgga agggaacatc ttaaggtcct gctagagccc tctgcataga
     2941 caaagggttt agggaaagcc cagcttgaag accctccatg tgtgcgtgtc tgaacttgtc
     3001 cttcagagag agaaacagct agaagatcaa gcaagctggg atcctattct tgccagattc
     3061 tgtgtgcttg tgtgtaggtt aggtacctag tgtggccccg accacctact ctaatcacct
     3121 cttcagggaa ctgacactgg gccctgctac gtgggatttt ttataagagt ggaagtgagc
     3181 agagtaaaca ctccccacac tagcgtttcc taagtgaatc tacataataa aatggtgaac
     3241 aagacaaaaa aaaaaaaaaa aaaa
//
