LOCUS       NM_031493                540 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus X-linked lymphocyte-regulated 5C (Xlr5c), mRNA.
ACCESSION   NM_031493
VERSION     NM_031493.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Zhuang,X.J., Tang,W.H., Liu,C.Y., Zhu,J.L., Feng,X., Yan,J.,
            Lian,Y., Liu,P. and Qiao,J.
  TITLE     Identification and Characterization of Xlr5c as a Novel Nuclear
            Localization Protein in Mouse Germ Cells
  JOURNAL   PLoS One 10 (6), e0130087 (2015)
   PUBMED   26075718
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Tamplin,O.J., Cox,B.J. and Rossant,J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   3  (bases 1 to 540)
  AUTHORS   Raefski,A.S. and O'Neill,M.J.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   4  (bases 1 to 540)
  AUTHORS   Davies,W., Isles,A., Smith,R., Karunadasa,D., Burrmann,D.,
            Humby,T., Ojarikre,O., Biggin,C., Skuse,D., Burgoyne,P. and
            Wilkinson,L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
REFERENCE   5  (bases 1 to 540)
  AUTHORS   Mallon,A.M., Platzer,M., Bate,R., Gloeckner,G., Botcherby,M.R.,
            Nordsiek,G., Strivens,M.A., Kioschis,P., Dangel,A., Cunningham,D.,
            Straw,R.N., Weston,P., Gilbert,M., Fernando,S., Goodall,K.,
            Hunter,G., Greystrong,J.S., Clarke,D., Kimberley,C., Goerdes,M.,
            Blechschmidt,K., Rump,A., Hinzmann,B., Mundy,C.R., Miller,W.,
            Poustka,A., Herman,G.E., Rhodes,M., Denny,P., Rosenthal,A. and
            Brown,S.D.
  TITLE     Comparative genome sequence analysis of the Bpa/Str region in mouse
            and Man
  JOURNAL   Genome Res 10 (6), 758-775 (2000)
   PUBMED   10854409
REFERENCE   6  (bases 1 to 540)
  AUTHORS   Levin,M.L., Chatterjee,A., Pragliola,A., Worley,K.C., Wehnert,M.,
            Zhuchenko,O., Smith,R.F., Lee,C.C. and Herman,G.E.
  TITLE     A comparative transcription map of the murine bare patches (Bpa)
            and striated (Str) critical regions and human Xq28
  JOURNAL   Genome Res 6 (6), 465-477 (1996)
   PUBMED   8828036
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL049866.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC119509.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="129/Sv"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..540
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /note="X-linked lymphocyte-regulated 5C"
                     /db_xref="GeneID:27084"
                     /db_xref="MGI:MGI:1350981"
     CDS             1..540
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated protein 5C"
                     /protein_id="NP_113681.1"
                     /db_xref="CCDS:CCDS30198.1"
                     /db_xref="GeneID:27084"
                     /db_xref="MGI:MGI:1350981"
                     /translation="MSNKEQKDMKKSGKHQRVHKTLPSDDFKNSDAVNPADKPAVGTS
                     GMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQS
                     ILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIED
                     HETKLKNAKDMCDTFLKVW"
     exon            1..106
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /inference="alignment:Splign:2.1.0"
     exon            107..176
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /inference="alignment:Splign:2.1.0"
     exon            177..211
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /inference="alignment:Splign:2.1.0"
     exon            212..332
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /inference="alignment:Splign:2.1.0"
     exon            333..432
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /inference="alignment:Splign:2.1.0"
     exon            433..540
                     /gene="Xlr5c"
                     /gene_synonym="Xlr5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtcaaaca aggaacagaa ggacatgaag aaaagtggca agcaccagag ggtacataag
       61 accctcccat cagatgactt caagaactca gatgcagtta accctgctga caaaccagca
      121 gttggtacca gtgggatggg cagccattct tcaggatcag acatgcaaga ggccagggag
      181 cctgttcaga agaagatgca ggatttcaaa ggtgatgatg gtacaggact tcttatggaa
      241 aagaggaaac agtttgaaga ggatgtaaat gcctctttca gaagtctgaa tgaaaacctc
      301 cagagcattt tgaaagctca gcagaattca aggcaggagc ttaagtctct gtactgtgaa
      361 agatttgggt cggtgtacca caattggctg gttgagatgg acagaacaag ggaccaagaa
      421 gaatacttca gttttataac ccagcagcaa atgaagattt tacagacggc tatagaggac
      481 catgaaacca agctcaaaaa cgctaaagat atgtgtgaca catttttgaa ggtctggtag
//
