LOCUS       NM_001111293            1134 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus X-linked lymphocyte-regulated 5B (Xlr5b), mRNA.
ACCESSION   NM_001111293 XM_890434 XM_899015
VERSION     NM_001111293.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Tamplin OJ, Cox BJ and Rossant J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Raefski AS and O'Neill MJ.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   3  (bases 1 to 1134)
  AUTHORS   Davies W, Isles A, Smith R, Karunadasa D, Burrmann D, Humby T,
            Ojarikre O, Biggin C, Skuse D, Burgoyne P and Wilkinson L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX813330.7.
            
            On or before Dec 13, 2007 this sequence version replaced
            XM_899015.2, XM_890434.3.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data because no single transcript from the same strain was
            available for the full length of the gene. The extent of this
            transcript is supported by transcript alignments and orthologous
            data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384,
                              SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                BX813330.7         124559-124614
            57-193              BX813330.7         126944-127080
            194-263             BX813330.7         127599-127668
            264-298             BX813330.7         128836-128870
            299-419             BX813330.7         129904-130024
            420-519             BX813330.7         130701-130800
            520-618             BX813330.7         132188-132286
            619-723             BX813330.7         133506-133610
            724-1134            BX813330.7         133707-134117
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..1134
                     /gene="Xlr5b"
                     /note="X-linked lymphocyte-regulated 5B"
                     /db_xref="GeneID:627081"
                     /db_xref="MGI:MGI:3574109"
     exon            1..56
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            57..193
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..798
                     /gene="Xlr5b"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated 5B"
                     /protein_id="NP_001104763.1"
                     /db_xref="CCDS:CCDS53095.1"
                     /db_xref="GeneID:627081"
                     /db_xref="MGI:MGI:3574109"
                     /translation="MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTS
                     GMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQS
                     ILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIED
                     HETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIA
                     MVETYLQSLIHESSEETI"
     exon            194..263
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            264..298
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            299..419
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            420..519
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            520..618
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            619..723
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
     exon            724..1134
                     /gene="Xlr5b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcggaggtt tagttccctg gctgagcggc caggtatctc caggagaggc ccaagggagt
       61 cctgtctgac ccaggaaggt tccagccatg tcaaacaagg aacaaaaggc catgaagaaa
      121 agtggcaagc accagagggt acataagacc ctcccatcag atgacttcaa gaactcagat
      181 gaagttaacc ctgctgacaa accagcagtt ggtaccagtg ggatgggcag ccattcttca
      241 ggatcagaca tgcaagaggc cagggagcct gttcagaaga agatgcagga tttcaaaggt
      301 gatgatggta caggacttct tatggaaaag aggaaacagt ttgaagagga tgtaaatgcc
      361 tctttcagaa gtctgaatga aaacctccag agcattttga aagctcagca gaattcaagg
      421 caggagctta agtctctgta ctgtgaaaga tttgggtcgg tgtaccacaa ttggctggtt
      481 gagatggaca gaacaaggga ccaagaagaa tacttcagtt ttataaccca gcagcaaatg
      541 aagattttac agacggctat agaggaccat gaaaccaagc tcaaaaacgc taaagatatg
      601 tgtgacacat ttttgaagaa agccaacgac ttgagtaaac gtcaaaaaac ctttattggt
      661 ggtcagcaga ctattgtgga gaaggaaatc tccaaggtgc agaacagagt aatcatggaa
      721 acccaagatc aagacatagc catggttgaa acataccttc agtccctgat ccatgaaagc
      781 tctgaagaaa ccatctgaag atcacacata ggatacacag ggaaggaagc gttagccatg
      841 ctaagaagat gttggtagta gccagtgcag ctcctttctc tttactttgt tacaattgag
      901 actgagacac tgttaatcat taagtgaact cccagcagct ctgtgagtag cgaggacagt
      961 taagtgtgga tcatccaggc ccatgacagc aagggagatt cattctgccc agtagtggca
     1021 attacatttt ggaagcaaat gtcatttgac tttgtggttg attctctgtc actgttccaa
     1081 agtgaacatt accttactta ttttaggaag aagtgaataa agatgggacc catt
//
