LOCUS       NM_001045539            1650 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus X-linked lymphocyte-regulated 5A (Xlr5a), mRNA.
ACCESSION   NM_001045539 XM_890389 XM_898979 XM_903631 XM_903813 XM_908956
VERSION     NM_001045539.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Tamplin OJ, Cox BJ and Rossant J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Raefski AS and O'Neill MJ.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   3  (bases 1 to 1650)
  AUTHORS   Davies W, Isles A, Smith R, Karunadasa D, Burrmann D, Humby T,
            Ojarikre O, Biggin C, Skuse D, Burgoyne P and Wilkinson L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX813330.7.
            
            On Oct 28, 2009 this sequence version replaced NM_001045539.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC051681.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               BX813330.7         93320-93420         c
            102-238             BX813330.7         90853-90989         c
            239-308             BX813330.7         90265-90334         c
            309-343             BX813330.7         89063-89097         c
            344-464             BX813330.7         87909-88029         c
            465-564             BX813330.7         87133-87232         c
            565-663             BX813330.7         85647-85745         c
            664-768             BX813330.7         84331-84435         c
            769-1650            BX813330.7         83353-84234         c
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..1650
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /note="X-linked lymphocyte-regulated 5A"
                     /db_xref="GeneID:574438"
                     /db_xref="MGI:MGI:3574108"
     exon            1..101
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            102..238
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..843
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /note="X-linked lymphocyte-regulated 5D"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated 5A"
                     /protein_id="NP_001039004.2"
                     /db_xref="CCDS:CCDS30194.1"
                     /db_xref="GeneID:574438"
                     /db_xref="MGI:MGI:3574108"
                     /translation="MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTS
                     GMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQS
                     ILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIED
                     HETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDIS
                     MVETYLQSLIHESSEETI"
     exon            239..308
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            309..343
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            344..464
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            465..564
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            565..663
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            664..768
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
     exon            769..1650
                     /gene="Xlr5a"
                     /gene_synonym="Xlr5d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caatgaccgt gcccacccgc gagggtgagt gggctttgtg ggatcttcgg aggtttagtt
       61 ccctggctga gcggccaggt atctccagga gaggcccaag ggagtcctgt ctgacccagg
      121 aaggttccag ccatgtcaaa caaggaacaa aaggccatga agaaaagtgg caagcaccag
      181 agggtacata agaccctccc atcagatgac ttcaagaact cagatgaagt taaccctgct
      241 gacaaaccag cagttggtac cagtgggatg ggcagccatt cttcaggatc agacatgcaa
      301 gaggccaggg agcctgttca gaagaagatg caggatttca aaggtgatga tggtacagga
      361 cttcttatgg aaaagaagaa gcagtttgaa gaggatgtaa atgcctcttt cagaagtctg
      421 aatgaaaacc tccagagcat tttgaaagct cagcagaatt caaggcagga gcttaagtct
      481 ctgtactgtg aaagatttgg gtcggtgtac cacaattggc tggttgagat ggacagaaca
      541 agggaccaag aagaatactt cagttttata acccagcagc aaatgaagat tttacagacg
      601 gctatagagg accatgaaac caagctcaaa aacgctaaag atatgtgtga cacatttttg
      661 aagaaagcca acgacttgag taaacgtcaa aaaaccttta ttggtggtca gcacactatt
      721 gtggagaagg aaatctccaa ggtgcagaac agagtaatca tggaaaccca agatcaagac
      781 atatccatgg ttgaaacata ccttcagtcc ctgatccatg aaagctctga agaaaccatc
      841 tgaagatcac acataggata cacagggaag gaagcgttag ccatgctaag aagatgttgg
      901 tagtagccag tgcagctcct ttctctttac tttgttacaa ttgagactga gacactgtta
      961 atcattaagt gaactcccag cagctctgtg agtagcgagg acagttaagt gtggatcatc
     1021 caggcccatg acagcaaggg agattcattc tgcccagtag tggcaattat attttggaag
     1081 caaatgtcat ttgactttgt ggttgattct ctgtcactgt tccaaagtga atgttaccat
     1141 acttatttta ggaagaagtg aataaagatg ggacccattt ttctgtgcat gctttcattt
     1201 ctcatgaggt cacagagacc gttccattgc aatgggaaaa tcaacccaac atgccaccga
     1261 gacttgctga acacactcat gtttgtgtgc tcagaagtgt taaaaaaaat cttcttaaca
     1321 tgattcccac gacagagcca ttcctaatgt gttgactctg tgctagttgt ggggctgtgg
     1381 catttcccaa agacacccag actcattttc aaagctgtct tcaacactgg ttacctttgg
     1441 atgaaagcat tttatcagcc tgtatctgtg taagcatttg tggctccagt gttttggagg
     1501 ggtctttaca tgagtgtttt ctagggttct ccttagagag tctactattc atcaagtcct
     1561 tctgcctgta tgtgtgtgtt tgtctaactc cttagtcatt cattctctta tccttgccct
     1621 atgctgtatt tattaaaatg aatgcttaga
//
