LOCUS       NM_001293680            1232 bp    mRNA    linear   ROD 24-FEB-2022
DEFINITION  Mus musculus X-linked lymphocyte-regulated 4B (Xlr4b), transcript
            variant 6, mRNA.
ACCESSION   NM_001293680 XM_006528057 XM_006529021
VERSION     NM_001293680.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1232)
  AUTHORS   Di Segni M, D'Addario SL, Babicola L, Ielpo D, Lo Iacono L,
            Andolina D, Accoto A, Luchetti A, Mancini C, Parisi C, D'Onofrio M,
            Arisi I, Brandi R, Pascucci T, Cifani C, D'Amato FR and Ventura R.
  TITLE     Xlr4 as a new candidate gene underlying vulnerability to cocaine
            effects
  JOURNAL   Neuropharmacology 168, 108019 (2020)
   PUBMED   32113966
REFERENCE   2  (bases 1 to 1232)
  AUTHORS   He N, Lim SJ, Moreira de Mello JC, Navarro I, Bialecka M, Salvatori
            DCF, van der Westerlaken LAJ, Pereira LV and Chuva de Sousa Lopes
            SM.
  TITLE     At Term, XmO and XpO Mouse Placentas Show Differences in Glucose
            Metabolism in the Trophectoderm-Derived Outer Zone
  JOURNAL   Front Cell Dev Biol 5, 63 (2017)
   PUBMED   28680878
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1232)
  AUTHORS   Tamplin OJ, Cox BJ and Rossant J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   4  (bases 1 to 1232)
  AUTHORS   Cubelos B, Sebastian-Serrano A, Beccari L, Calcagnotto ME, Cisneros
            E, Kim S, Dopazo A, Alvarez-Dolado M, Redondo JM, Bovolenta P,
            Walsh CA and Nieto M.
  TITLE     Cux1 and Cux2 regulate dendritic branching, spine morphology, and
            synapses of the upper layer neurons of the cortex
  JOURNAL   Neuron 66 (4), 523-535 (2010)
   PUBMED   20510857
REFERENCE   5  (bases 1 to 1232)
  AUTHORS   Hughes DS, Keynes RJ and Tannahill D.
  TITLE     Extensive molecular differences between anterior- and
            posterior-half-sclerotomes underlie somite polarity and spinal
            nerve segmentation
  JOURNAL   BMC Dev Biol 9, 30 (2009)
   PUBMED   19463158
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1232)
  AUTHORS   Raefski AS and O'Neill MJ.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   7  (bases 1 to 1232)
  AUTHORS   Davies W, Isles A, Smith R, Karunadasa D, Burrmann D, Humby T,
            Ojarikre O, Biggin C, Skuse D, Burgoyne P and Wilkinson L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX571735.6, BE627633.1, BC034848.1 and BU755708.1.
            
            On or before Jun 13, 2014 this sequence version replaced
            XM_006528057.1, XM_006529021.1.
            
            Transcript Variant: This variant (6) differs in the 5' UTR,
            compared to variant 1. Variants 1, 2, 3, 4, 5, and 6 encode the
            same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC145483.1, SRR13422590.232695.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-149               BX571735.6         43319-43467
            150-232             BE627633.1         53-135
            233-360             BC034848.1         588-715
            361-1214            BC034848.1         889-1742
            1215-1232           BU755708.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..1232
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /note="X-linked lymphocyte-regulated 4B"
                     /db_xref="GeneID:27083"
                     /db_xref="MGI:MGI:1350975"
     exon            1..149
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            150..232
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            233..360
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     CDS             264..911
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /note="X-linked lymphocyte regulated gene 4"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated 4B"
                     /protein_id="NP_001280609.1"
                     /db_xref="CCDS:CCDS41010.1"
                     /db_xref="GeneID:27083"
                     /db_xref="MGI:MGI:1350975"
                     /translation="MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGES
                     SSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDY
                     SHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHL
                     KNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS"
     exon            361..429
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            430..547
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            548..647
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            648..746
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            747..842
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
     exon            843..1216
                     /gene="Xlr4b"
                     /gene_synonym="Xlr4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaccaagaag gggctttttt cctgggaggt aaagggttct gaggagattg tggtgaggca
       61 gtgtcagagg aaggtgacgc ggaagggaag tactaacccg aacgaaggaa cgaagggacg
      121 ctgtggtaaa ggaccctgtg ttcatcaaac tttcatggat cgctgggtgc cctgaggtgc
      181 acctggaatc tacttggtga gtacagctct caaacggaag tgccgcctac aggattcctg
      241 tctagtgcag ggagactata gtcatggctt ccaaaatcaa gggcagacct cccaagcaac
      301 caaaggtgac tcctgctctg ccatctaatg attcacagca gcttcatgaa aataacccag
      361 gaaacaatct ggcccttgaa acttgtgggg aaagcagttc ttcccatgga acaggtggac
      421 caaagccagg gcccagtaag aaaactctaa atgaaaggaa gagaaagtat ggggtgagtg
      481 taaataaaac tgtccaaaac attgagtgga atgttgacca cttcttgaaa gtccagcatg
      541 agcgaaggca ggaactttat aaggactatt ctcatcagtt tttgactttg gttatgatgt
      601 ggaatataga tgtagaccaa atcaagaaac aggctggaaa actctctgat atacttgatg
      661 agcaacagaa gctttttcaa caatttcaaa gtattcatat gcagaaaata gaagaattta
      721 aggagttatg tgatcgacac ttgaagaatc tacaggctat taagtgttgt cgccgaaaag
      781 ctattattga ggaagccaga aagctaatgg actacttgga aaagagagtt actgaagaaa
      841 ctgttcacgt aaacaagcag gaagcaaagg atggtgttca atcatcactt ctatccctgc
      901 taatctcgta acacctggaa gaaagaagct caaccaccat gaaatgactt catgatattt
      961 ctaaatctat ggtgacatga cactgctatt gtagtgatta tcaattcctt gttcacatct
     1021 ctgaggggtc agaaaaactt tactgagaat gttttgtttg tggaatttat cgcacatgta
     1081 gtatgggatc atcagggata ttatatatga ggtctcgtgt acagttaaag cttgcgtcct
     1141 gtgatttcct gtatggatac cctgggaaat ccttacttgg gaacgtttga tttaataaac
     1201 atgaaatagt ttcagaaaaa aaaaaaaaaa aa
//
