LOCUS       NM_001081642            1191 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus X-linked lymphocyte-regulated 4A (Xlr4a), mRNA.
ACCESSION   NM_001081642 XM_898913 XM_972649 XM_985797 XM_985832 XM_985870
            XM_985903 XM_985942 XM_985977 XM_988796 XM_988827 XM_988867
            XM_988909 XM_988942 XM_988983
VERSION     NM_001081642.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Di Segni M, D'Addario SL, Babicola L, Ielpo D, Lo Iacono L,
            Andolina D, Accoto A, Luchetti A, Mancini C, Parisi C, D'Onofrio M,
            Arisi I, Brandi R, Pascucci T, Cifani C, D'Amato FR and Ventura R.
  TITLE     Xlr4 as a new candidate gene underlying vulnerability to cocaine
            effects
  JOURNAL   Neuropharmacology 168, 108019 (2020)
   PUBMED   32113966
  REMARK    GeneRIF: Xlr4 as a new candidate gene underlying vulnerability to
            cocaine effects.
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Tamplin OJ, Cox BJ and Rossant J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   3  (bases 1 to 1191)
  AUTHORS   Raefski AS and O'Neill MJ.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   4  (bases 1 to 1191)
  AUTHORS   Davies W, Isles A, Smith R, Karunadasa D, Burrmann D, Humby T,
            Ojarikre O, Biggin C, Skuse D, Burgoyne P and Wilkinson L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX813330.7.
            
            On or before Feb 23, 2007 this sequence version replaced
            XM_985870.1, XM_985903.1, XM_985942.1, XM_985977.1, XM_985832.1,
            XM_985797.1, XM_898913.2, XM_988867.1, XM_988909.1, XM_988942.1,
            XM_988983.1, XM_988827.1, XM_988796.1, XM_972649.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098242.1, CF616940.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               BX813330.7         58101-58225         c
            126-208             BX813330.7         57703-57785         c
            209-336             BX813330.7         57192-57319         c
            337-405             BX813330.7         56438-56506         c
            406-523             BX813330.7         54694-54811         c
            524-623             BX813330.7         53743-53842         c
            624-722             BX813330.7         52451-52549         c
            723-818             BX813330.7         50553-50648         c
            819-1191            BX813330.7         50063-50435         c
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..1191
                     /gene="Xlr4a"
                     /note="X-linked lymphocyte-regulated 4A"
                     /db_xref="GeneID:434794"
                     /db_xref="MGI:MGI:3574098"
     exon            1..125
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            126..208
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            209..336
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     CDS             240..887
                     /gene="Xlr4a"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated 4A"
                     /protein_id="NP_001075111.1"
                     /db_xref="CCDS:CCDS41005.1"
                     /db_xref="GeneID:434794"
                     /db_xref="MGI:MGI:3574098"
                     /translation="MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGES
                     SSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDY
                     SHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHL
                     KNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS"
     exon            337..405
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            406..523
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            524..623
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            624..722
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            723..818
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     exon            819..1191
                     /gene="Xlr4a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1171..1176
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xlr4a"
ORIGIN      
        1 aaggggcttt ttcctgggag gtaaagggtt ctgaggagat tgtggtgagg cagtgtcaga
       61 ggaaggtgac gcggaaggga agtactaacc cgaacgaagg aacgaaggaa caaagggacg
      121 ctgtgctttc atggatcgct gggtgccctg aggtgcacct ggaatctact tggtgagtac
      181 agctctcaaa cggaagtgcc gcctacagga ttcctgtcta gtgcagggag actatagtca
      241 tggcttccaa aatcaagggc agacctccca agcaaccaaa ggtgactcct gctctgccat
      301 ctgacgattc acagcagctt catgaaaata acccaggaaa caatctggcc cttgaaactt
      361 gtggggaaag cagttcttcc catggaacag gtggaccaaa gccagggccc agtaagaaaa
      421 ctctaaatga aaggaagaga aagtatgggg tgagtgtaaa taaaactgtc caaaacattg
      481 agtggaatgt tgaccacttc ttgaaagtcc agcatgagcg aaggcaggaa ctttataagg
      541 actattctca tcagtttttg actttggtta tgatgtggaa tatagatgta gaccaaatca
      601 agaaacaggc tggaaaactc tctgatatac ttgatgagca acaaaagctt tttcaacaat
      661 ttcaaagtat tcatatgcag aaaatagaag aatttaagga gttatgtgat cgacacttga
      721 agaatctaca ggccattaag tgttgtcgcc gaaaagctat tattgaggaa gccagaaaac
      781 taatggacta cttggaaaag acagttactg aagaaactgt tcacgtaaac aagcaggaag
      841 caaaggatgg tgttcaatca tcacttctat ccctgctaat ctcgtaacac ctggaagaaa
      901 gaagctcaac caccatgaaa tgacttgatg atattttcta aatctatggt gacatgacac
      961 tgttattgta gtgattatca attccttgtt cacatctctg aggcatcaga aaaactttac
     1021 tgagaatgtt ttgtttgtgg aatttatcgc acatgtagta tgggatcatc agggatatta
     1081 tatatgaggt ctcgtgtaca gttaaagctc gcgtcctgtg atttcctgta tggataccct
     1141 gggaaatcct tacttgggaa cgtttgattt aataaacatg aaatagtttc a
//
