LOCUS       NM_011727               1584 bp    mRNA    linear   ROD 02-JUL-2024
DEFINITION  Mus musculus X-linked lymphocyte-regulated 3C (Xlr3c), mRNA.
ACCESSION   NM_011727
VERSION     NM_011727.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Inagawa,M., Nakajima,K., Makino,T., Ogawa,S., Kojima,M., Ito,S.,
            Ikenishi,A., Hayashi,T., Schwartz,R.J., Nakamura,K., Obayashi,T.,
            Tachibana,M., Shinkai,Y., Maeda,K., Miyagawa-Tomita,S. and
            Takeuchi,T.
  TITLE     Histone H3 lysine 9 methyltransferases, G9a and GLP are essential
            for cardiac morphogenesis
  JOURNAL   Mech Dev 130 (11-12), 519-531 (2013)
   PUBMED   23892084
REFERENCE   3  (bases 1 to 1584)
  AUTHORS   Raefski,A.S. and O'Neill,M.J.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   4  (bases 1 to 1584)
  AUTHORS   Davies,W., Isles,A., Smith,R., Karunadasa,D., Burrmann,D.,
            Humby,T., Ojarikre,O., Biggin,C., Skuse,D., Burgoyne,P. and
            Wilkinson,L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
  REMARK    GeneRIF: Our findings confirm the existence of X-linked imprinted
            effects on cognitive processes and identify a new maternally
            expressed imprinted gene candidate on the X chromosome, Xlr3b,
            which may be of importance in mediating the behavioral effects.
REFERENCE   5  (bases 1 to 1584)
  AUTHORS   Bergsagel,P.L., Timblin,C.R., Kozak,C.A. and Kuehl,W.M.
  TITLE     Sequence and expression of murine cDNAs encoding Xlr3a and Xlr3b,
            defining a new X-linked lymphocyte-regulated Xlr gene subfamily
  JOURNAL   Gene 150 (2), 345-350 (1994)
   PUBMED   7821804
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX571735.6.
            
            On Jul 27, 2007 this sequence version replaced NM_011727.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U02600.1, L22977.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                BX571735.6         94337-94376         c
            41-177              BX571735.6         92302-92438         c
            178-247             BX571735.6         91409-91478         c
            248-282             BX571735.6         90491-90525         c
            283-400             BX571735.6         88994-89111         c
            401-500             BX571735.6         88079-88178         c
            501-599             BX571735.6         86622-86720         c
            600-695             BX571735.6         84509-84604         c
            696-1584            BX571735.6         83526-84414         c
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..1584
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /note="X-linked lymphocyte-regulated 3C"
                     /db_xref="GeneID:22446"
                     /db_xref="MGI:MGI:3047103"
     exon            1..40
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            41..177
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..752
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /note="X-linked lymphocyte-regulated 3B; X-linked B-cell
                     surface antigen 3B; XLR-related protein A12"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated protein 3C"
                     /protein_id="NP_035857.2"
                     /db_xref="CCDS:CCDS30197.1"
                     /db_xref="GeneID:22446"
                     /db_xref="MGI:MGI:3047103"
                     /translation="MSSRKRKATDTAGRHSRMDPNLSSDDSQNPGAVAAANREVLDAG
                     REDIISSGTERQQARKEKQDLVQEFEEPRNKVLQENREKFSRIMTSSFSAMEVKIKDV
                     LKTHCEERQKLCQDYSLQFTNLNRKLTSDAYKLKKHAETLSNMFMEQQKFIHESLTLQ
                     KNRMKEFKSLCEKYLEKLEVLRDSRGNSIAEELRRLIATLEIKLLMLHNQQKTAAPPQ
                     SLLDVLFS"
     exon            178..247
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            248..282
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            283..400
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            401..500
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            501..599
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            600..695
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     exon            696..1584
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /inference="alignment:Splign:2.1.0"
     regulatory      896..901
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /note="hexamer: AATAAA"
     polyA_site      918
                     /gene="Xlr3c"
                     /gene_synonym="Xlr3b"
                     /note="major polyA site"
ORIGIN      
        1 ggagtggaag gaggctgcct tgtggagacg aggggactag gactcctatc taacacaaga
       61 agattctagc tatgtcaagc agaaaaagga aggccactga cactgctggc aggcactcaa
      121 ggatggatcc aaatctctcc tcagatgaca gccagaaccc aggtgcagtc gcagcagcta
      181 acagagaagt ccttgatgct ggtagggagg acattatttc ctcaggaaca gagaggcaac
      241 aggccaggaa ggaaaaacag gacttggtcc aagaattcga agagccacgt aacaaagttc
      301 ttcaggaaaa cagagaaaaa ttctcaagga tcatgacctc atctttcagt gccatggagg
      361 tcaaaattaa ggatgttctg aaaacccact gtgaagagag gcagaaactt tgtcaggact
      421 attctcttca gtttacaaat ttgaatagga agttaacttc ggatgcatac aaactcaaga
      481 aacatgccga aacactctct aatatgttta tggagcaaca gaagtttatt catgaaagtc
      541 tcactcttca gaagaacaga atgaaggaat ttaaatcact gtgtgaaaaa tacttggaga
      601 aactggaggt actgagggat tctcggggaa attccatcgc tgaagagctg agacgtctta
      661 tagccacctt ggaaatcaaa cttctgatgc tgcataacca gcaaaagact gctgctcctc
      721 cacagtctct cctggatgtg ttattctcat aaaactttgg agcacaaaag ccgatatgag
      781 gggagcagta taatcatctg ggtgaagctg ctagtgctga tgattgcagc tttggtgcct
      841 ggatcttctc ctgtcttcct cctgttcctg aagatgcccc gttctgttaa atccaaataa
      901 accctgggat ttgtgtgaca gcagtgcaaa tatgtctgta gggaactcca gccctcaggt
      961 agagatggca ggctttcctt ggtagcatcg caattactgg ttagcacaca ttggtgttga
     1021 tacagtagat tatcatacct gaacatcatc tccccaaatt ggaaggcaca caagtgggct
     1081 attgttgtcg tgtccagata aataattaga gaagatacag gctttctttg acattctgct
     1141 ctgaaatgtg ttcagtgatg gagcctatga aactgacctt cagcctccaa aggcagtgtg
     1201 ctcttaaaag ttaaagtagt agaattcatc aaacctcccg agtaagaaag atgtgagtaa
     1261 tgtggcttga atcagtggaa atgccatttg cagacaacat ttacaaggtc tttcaattaa
     1321 atgaatctgt cacactaaga ggtgattctg aacatgaata cagcttaatt cgccatcatt
     1381 tattaatccc tcacttgtat ggataagagt aacttagaat gttttgtttg tggaatttat
     1441 cgcacatgta gtatgggatc atcagggata ttatatatga ggtctcgtgt acagttaaag
     1501 ctcgtgtcct gtgatttcct gtatggatac cctgggaaat ccttacttgg gaacgtttga
     1561 tttaataaac atgaaatagt ttca
//
