LOCUS       NM_001405805            2065 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus X-linked lymphocyte-regulated 3B (Xlr3b), transcript
            variant 2, mRNA.
ACCESSION   NM_001405805 XM_006528201
VERSION     NM_001405805.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   He,N., Lim,S.J., Moreira de Mello,J.C., Navarro,I., Bialecka,M.,
            Salvatori,D.C.F., van der Westerlaken,L.A.J., Pereira,L.V. and
            Chuva de Sousa Lopes,S.M.
  TITLE     At Term, XmO and XpO Mouse Placentas Show Differences in Glucose
            Metabolism in the Trophectoderm-Derived Outer Zone
  JOURNAL   Front Cell Dev Biol 5, 63 (2017)
   PUBMED   28680878
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Inagawa,M., Nakajima,K., Makino,T., Ogawa,S., Kojima,M., Ito,S.,
            Ikenishi,A., Hayashi,T., Schwartz,R.J., Nakamura,K., Obayashi,T.,
            Tachibana,M., Shinkai,Y., Maeda,K., Miyagawa-Tomita,S. and
            Takeuchi,T.
  TITLE     Histone H3 lysine 9 methyltransferases, G9a and GLP are essential
            for cardiac morphogenesis
  JOURNAL   Mech Dev 130 (11-12), 519-531 (2013)
   PUBMED   23892084
REFERENCE   3  (bases 1 to 2065)
  AUTHORS   Cubelos,B., Sebastian-Serrano,A., Beccari,L., Calcagnotto,M.E.,
            Cisneros,E., Kim,S., Dopazo,A., Alvarez-Dolado,M., Redondo,J.M.,
            Bovolenta,P., Walsh,C.A. and Nieto,M.
  TITLE     Cux1 and Cux2 regulate dendritic branching, spine morphology, and
            synapses of the upper layer neurons of the cortex
  JOURNAL   Neuron 66 (4), 523-535 (2010)
   PUBMED   20510857
REFERENCE   4  (bases 1 to 2065)
  AUTHORS   Raefski,A.S. and O'Neill,M.J.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   5  (bases 1 to 2065)
  AUTHORS   Davies,W., Isles,A., Smith,R., Karunadasa,D., Burrmann,D.,
            Humby,T., Ojarikre,O., Biggin,C., Skuse,D., Burgoyne,P. and
            Wilkinson,L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
REFERENCE   6  (bases 1 to 2065)
  AUTHORS   Bergsagel,P.L., Timblin,C.R., Kozak,C.A. and Kuehl,W.M.
  TITLE     Sequence and expression of murine cDNAs encoding Xlr3a and Xlr3b,
            defining a new X-linked lymphocyte-regulated Xlr gene subfamily
  JOURNAL   Gene 150 (2), 345-350 (1994)
   PUBMED   7821804
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX571735.6.
            
            On May 3, 2022 this sequence version replaced XM_006528201.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4606964.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849385, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            imprinted gene :: PMID: 15908953
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-128               BX571735.6         21290-21417
            129-265             BX571735.6         23156-23292
            266-335             BX571735.6         23986-24055
            336-370             BX571735.6         24928-24962
            371-488             BX571735.6         26339-26456
            489-588             BX571735.6         27272-27371
            589-687             BX571735.6         28732-28830
            688-783             BX571735.6         30836-30931
            784-2065            BX571735.6         31026-32307
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..2065
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /note="X-linked lymphocyte-regulated 3B"
                     /db_xref="GeneID:574437"
                     /db_xref="MGI:MGI:109505"
     exon            1..128
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            129..265
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..840
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /note="isoform 1 is encoded by transcript variant 2;
                     X-linked lymphocyte-regulated protein 3B"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated protein 3B isoform
                     1"
                     /protein_id="NP_001392734.1"
                     /db_xref="GeneID:574437"
                     /db_xref="MGI:MGI:109505"
                     /translation="MSSRKRKATDTAGRHSRMDPNLSSDDSQNPGAVAAANREVLDAG
                     REDIISSGTERQQARKEKQDLVQEFEEPPNKVLQENRERFSRIMTSSFSAMEVKIKDV
                     LKTHCEERQKLCQDYSLQFTNLNRKLTSDAYKLKKHAETLSNMFMEQQKFIHESLTLQ
                     KNRMKEFKSLCEKYLEKLEVLRDSRGNSIAEELRRLIATLEIKLLMLHNQQKTAAPPQ
                     SLLDVLFS"
     exon            266..335
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            336..370
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            371..488
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            489..588
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            589..687
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            688..783
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            784..2065
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      984..989
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /note="hexamer: AATAAA"
     polyA_site      1006
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
     regulatory      2043..2048
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /note="hexamer: AATAAA"
     polyA_site      2065
                     /gene="Xlr3b"
                     /gene_synonym="EG574437; Xlr3"
                     /note="major polyA site"
ORIGIN      
        1 agtgggactc cgcgggtggt taggaggcac ccttgttgtc ctcgtcgtca ttgtagtggg
       61 acagtggggt cacagaatat gagggtcccg ggaagcctgt gaggtgactt ccggagcttt
      121 cttttactga ctcctatcta acacaagaag attctagcta tgtcaagcag aaaaaggaag
      181 gccactgaca ctgctggcag gcactcaagg atggatccaa atctctcctc agatgacagc
      241 cagaacccag gtgcagtcgc agcagctaac agagaagtcc ttgatgctgg tagggaggac
      301 attatttcct caggaacaga gaggcaacag gccaggaagg aaaaacagga tttggtccaa
      361 gaattcgaag agccacctaa caaagttctt caggaaaaca gagaaagatt ctcaaggatc
      421 atgacctcat ctttcagtgc catggaggtc aaaattaagg atgttctgaa aacccactgt
      481 gaagagaggc agaaactttg tcaggactat tctcttcagt ttacaaattt gaataggaag
      541 ttaacttcgg atgcatacaa actcaagaaa catgccgaaa cactctctaa tatgtttatg
      601 gagcaacaga agtttattca tgaaagtctc actcttcaga agaacagaat gaaggaattt
      661 aaatcactgt gtgaaaaata cttggagaaa ctggaggtac tgagggattc tcggggaaat
      721 tccatcgctg aagagctgag acgtctcata gccaccttgg aaatcaaact tctgatgctg
      781 cataaccagc aaaagactgc tgctcctcca cagtctctcc tggatgtgtt attctcataa
      841 aactttggag cacaaaagcc gatatgaggg gagcagtata atcatctggg tgaagctgct
      901 agtgctgatg attgcagctt cggtgcctgg atcttctcct gtcttcctcc tgttcctgaa
      961 gatgccccgt tctgttaaat ccaaataaac cctgggattt gtgtgacagc agtgcaaata
     1021 tgtctgtagg gaactccagc cctcgggtag agatggcagg ctttccttgg tagcatcgca
     1081 attactggtt agcacacatt ggtgttgata cagtagatta tcatacctga acatcatctc
     1141 cccaaattgg aaggcacaca agtgggctat tgttgtcgtg tccagataaa taattagaga
     1201 agatacaggc tttctttgac attctgctct gaaatgtgtt cagtgatgga gcctatgaaa
     1261 ctgaccttca gcctccaaag gcagtgtgct cttaatagtt aaagtagtag aattcatcaa
     1321 acctcccgag taagaaagat gtgagtaacg tggcttgaat cagtggaaat gccatttgca
     1381 gacaacattt acaaggtctt tcaattaaat gaatctgtca cactaagagg tgattctgaa
     1441 catgaataca gcttaattca ccatggttta ttaatccctc acttgtatgg ataggagtaa
     1501 cttagaatgt tttgtttgtg gaatttatcg cacatgtagt atgggatcat cagggatatt
     1561 atatatgagg tctcgtgtac agttaaagct cgcgtcctgt gatttcctgt atggataccc
     1621 tgggaaatcc ttacttggga acgtttgatt taataaacat gaaatagttt cagacttgtt
     1681 ggcatgagtc atttaattgc attctctttc tgacatccct gacgtttcac cccttctcag
     1741 acagacatgg ccccatgcca tgtggaggtg tgctgtcacc tgtgttcctg catggggcca
     1801 gtgtagtcca ggccacttgt ctcattgtgt cccgttgtgt agaagcattg aaaacaggct
     1861 gtgttcagcc tcccccattt tctccaagtt gaattgcatt cctccagact gaatgagggc
     1921 ttccctgctg ggatcatttt actgtctaaa gtttgcatta tctagaagaa cttccccctt
     1981 tgtgcaaact acctgtaacc ctgtgggcct ttagtattat ttctttaata atcattaatc
     2041 ataataaaat gttgtattat tagca
//
