LOCUS       NM_001110784            1694 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus X-linked lymphocyte-regulated 3A (Xlr3a), mRNA.
ACCESSION   NM_001110784 XM_001471591 XM_001471670
VERSION     NM_001110784.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1694)
  AUTHORS   Inagawa,M., Nakajima,K., Makino,T., Ogawa,S., Kojima,M., Ito,S.,
            Ikenishi,A., Hayashi,T., Schwartz,R.J., Nakamura,K., Obayashi,T.,
            Tachibana,M., Shinkai,Y., Maeda,K., Miyagawa-Tomita,S. and
            Takeuchi,T.
  TITLE     Histone H3 lysine 9 methyltransferases, G9a and GLP are essential
            for cardiac morphogenesis
  JOURNAL   Mech Dev 130 (11-12), 519-531 (2013)
   PUBMED   23892084
REFERENCE   4  (bases 1 to 1694)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   5  (bases 1 to 1694)
  AUTHORS   Raefski,A.S. and O'Neill,M.J.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   6  (bases 1 to 1694)
  AUTHORS   Davies,W., Isles,A., Smith,R., Karunadasa,D., Burrmann,D.,
            Humby,T., Ojarikre,O., Biggin,C., Skuse,D., Burgoyne,P. and
            Wilkinson,L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
REFERENCE   7  (bases 1 to 1694)
  AUTHORS   Bergsagel,P.L., Timblin,C.R., Kozak,C.A. and Kuehl,W.M.
  TITLE     Sequence and expression of murine cDNAs encoding Xlr3a and Xlr3b,
            defining a new X-linked lymphocyte-regulated Xlr gene subfamily
  JOURNAL   Gene 150 (2), 345-350 (1994)
   PUBMED   7821804
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX813330.7, DV662513.1, BC107255.1, BQ885410.1, AW556788.2 and
            CJ302076.1.
            
            On or before Nov 21, 2007 this sequence version replaced
            XM_001471591.1, XM_001471670.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC003812.1, CB235471.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                BX813330.7         72762-72813         c
            53-105              DV662513.1         1-53
            106-819             BC107255.1         15-728
            820-893             BQ885410.1         760-833
            894-1262            BC107255.1         803-1171
            1263-1646           AW556788.2         1-384               c
            1647-1694           CJ302076.1         356-403
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.29 cM"
     gene            1..1694
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /note="X-linked lymphocyte-regulated 3A"
                     /db_xref="GeneID:22445"
                     /db_xref="MGI:MGI:109506"
     exon            1..115
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            116..237
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     CDS             147..812
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /note="X-linked lymphocyte regulated 3; X-linked B-cell
                     surface antigen 3a"
                     /codon_start=1
                     /product="X-linked lymphocyte-regulated protein 3A"
                     /protein_id="NP_001104254.1"
                     /db_xref="CCDS:CCDS53092.1"
                     /db_xref="GeneID:22445"
                     /db_xref="MGI:MGI:109506"
                     /translation="MSSRERKATDTAGRHSRMDPNLSSDDSQNPANREVLDAGREDII
                     SSGTERQQARKEKQDLVQEFEEPPNKVLQENREKFSRIMTSSFSAMEVKIKDVLKTQC
                     EQRQKLCQDYSLQFTNLSRKLTSDAYKLKKQAETLSNMFMEQQKFIHETLTLQKNRME
                     EFKSLCEKYLEKLEVLRDSRGNSIAEELRRLIATLEIKLLMLHNQQNTAAPPQSLLDV
                     LFS"
     exon            238..307
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            308..342
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            343..460
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            461..560
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            561..659
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            660..755
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     exon            756..1647
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      957..962
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /note="hexamer: AATAAA"
     polyA_site      979
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /note="major polyA site"
     regulatory      1625..1630
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /note="hexamer: AATAAA"
     polyA_site      1647
                     /gene="Xlr3a"
                     /gene_synonym="Xlr3"
                     /note="major polyA site"
ORIGIN      
        1 gcatgtgcaa gctggtacac cagccaatca gagaacatta tatcagccga gacccgacca
       61 agtgggatga acctctgtgt ggaaggaggc tgccttgtgg agaggagggg actaggactc
      121 ctatctaaca caagaagatt ctagctatgt caagcaggga aaggaaggcc actgacactg
      181 ctggcaggca ctcaaggatg gatccaaatc tctcctcaga tgacagccag aacccagcta
      241 acagagaagt ccttgatgct ggtagggagg acattatttc ctcaggaaca gagaggcaac
      301 aggccaggaa ggaaaaacag gacttggtcc aagaattcga agagccacct aacaaagttc
      361 ttcaggaaaa cagagaaaaa ttctcaagga tcatgacctc atctttcagt gccatggagg
      421 tcaaaattaa ggatgttctg aaaacccagt gtgaacagag gcagaaactt tgtcaggact
      481 attctcttca gtttacaaat ttgagtagga agttaacttc ggatgcatac aaactcaaga
      541 aacaggccga aacactctct aatatgttta tggagcaaca gaagtttatt catgaaactc
      601 tcactctcca gaagaacaga atggaggaat ttaaatcact gtgtgaaaaa tacttggaga
      661 aactggaggt actgagggat tctcggggaa attccatcgc tgaagagctg agacgtctca
      721 tagccacctt ggaaatcaaa cttctgatgc tgcataacca gcaaaacact gctgctcctc
      781 cacagtctct cctggatgtg ttattctcat aaaactttgg agcacaaaag ccgatatgag
      841 gggagcagta taatcatctg ggtgaagctg ctagtgctga tgattgcagc ttcggtgcct
      901 ggatcttctc ctgtcttcct cctgttcctg aagatgcccc gttctgttaa aatccaaata
      961 aaccctggga tttgtgtgac agcagtgcaa atatgtctgt agggaactcc agccctcggg
     1021 tagagatggc aggctttcct tggtagcatc gcaattactg gttagcacac attggtgttg
     1081 atacagtaga ttatcatacc tgaacatcat ctccccaaat tggaaggcac acaagtgggc
     1141 tattgttgtc gtgtccagat aaataattag agaagataca ggctttcttt gacattctgc
     1201 tctgaaatgt gttcagtgat ggagcctatg aaactgacct tcagcctcca aaggcagtgt
     1261 gctcttaata gttaaagtag tagaattcat caaacctccc gagtaagaaa gatgtgagta
     1321 acgtggcttg aatcagtgga aatgccattt gcagacaaca tttacaaggt ctttcaatta
     1381 aatgaatctg tcacactaag aggtgattct gaacatgaat acagcttaat tcgccatcat
     1441 ttattaatcc ctcacttgta tggataggag taacttagaa tgttttgttt gtggaattta
     1501 tcggccatgt agtatgggat catcagggat attatatatg aggtctcgtg tacagttaaa
     1561 gctcgcgtcc tgtgatttcc tgtatggata ccctgggtaa tccttacttg ggaacgtttg
     1621 atttaataaa catgaaatag tttcagaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1681 aaaaaaaaaa aaaa
//
