LOCUS       NM_001011873            1926 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus X-linked Kx blood group related 9 (Xkr9), mRNA.
ACCESSION   NM_001011873 XM_358536
VERSION     NM_001011873.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Suzuki,J., Imanishi,E. and Nagata,S.
  TITLE     Exposure of phosphatidylserine by Xk-related protein family members
            during apoptosis
  JOURNAL   J Biol Chem 289 (44), 30257-30267 (2014)
   PUBMED   25231987
  REMARK    GeneRIF: Unlike Xkr8, which is ubiquitously expressed, Xkr4 and
            Xkr9 expression is tissue-specific.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC116708.19.
            
            On Nov 17, 2006 this sequence version replaced NM_001011873.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY534255.1, SRR5189685.307077.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                AC116708.19        56555-56651
            98-736              AC116708.19        59910-60548
            737-957             AC116708.19        71840-72060
            958-1926            AC116708.19        88539-89507
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 4.31 cM"
     gene            1..1926
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /note="X-linked Kx blood group related 9"
                     /db_xref="GeneID:381246"
                     /db_xref="MGI:MGI:2686466"
     exon            1..97
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /inference="alignment:Splign:2.1.0"
     exon            98..736
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /inference="alignment:Splign:2.1.0"
     CDS             465..1586
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /note="X Kell blood group precursor related family member
                     9 homolog"
                     /codon_start=1
                     /product="XK-related protein 9"
                     /protein_id="NP_001011873.1"
                     /db_xref="CCDS:CCDS14824.1"
                     /db_xref="GeneID:381246"
                     /db_xref="MGI:MGI:2686466"
                     /translation="MKYTKCNFMMSVLGIIIYVTDLVADIVLSVRYFHDGQYVLGVLT
                     LSFVLCGTLIVHCFSYSWLKADLEKAGQENERYFLLLHCLQGGVFTRYWFALRTGYHV
                     VFKHSDRKSNFMEEQTDPHKEAIDMATDLSMLRLFETYLEGCPQLILQLYAFLECGQA
                     NLSQCMVIMVSCCAISWSTVDYQIALRKSLPDKNLLRGLWPKLMYLFYKLLTLLSWML
                     SVVLLLFVDVRVALLLLLFLWITGFIWAFINHTQFCNSVSMEFLYRIVVGFILVFTFF
                     NIKGQNTKCPMSCYYTVRVLGTLGILTVFWIYPLSIFNSDYFIPISATIVLALLLGII
                     FLGVYYGNFHPNRNVEPQLDETDGKAPQRDCRIRYFLMD"
     exon            737..957
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1926
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1633..1638
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /note="hexamer: AGTAAA"
     polyA_site      1654
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /note="major polyA site"
     regulatory      1905..1910
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /note="hexamer: AATAAA"
     polyA_site      1926
                     /gene="Xkr9"
                     /gene_synonym="Gm1620; XRG9"
                     /note="major polyA site"
ORIGIN      
        1 gatcctaaag agttagacag tgaagaaata gaactcataa gctgaagatt tccaagaaga
       61 gacattgagt taaagaaggc ttttatattt gtcacaaaca ttgttatctg taatgaagat
      121 cacagcagag gcgaagatac agcaaggcct tcttgtacca cttgatctgg cgtagacatt
      181 tttttttaaa ggaagttaaa gttattcact tttgttttag tgttccaatt tcataatatt
      241 tatttattta tttttcgtac taggcactga atataggagt gtatgaatgt tagataaaca
      301 ctccatcact gaactatatc accatattct tttcactagt tagactcagt gtataaatta
      361 caattcaatg ctaacccaaa agatacacta gtatccattg tggcattttc ccctattttt
      421 gtatctgaaa aggagtaact aggcaatagc cacagtcctt cataatgaaa tataccaagt
      481 gtaattttat gatgtccgtt ttgggcatta taatctatgt aactgattta gttgcagaca
      541 ttgtcctatc tgttaggtac ttccatgatg gacaatatgt tcttggtgtt ttaaccttga
      601 gctttgtgct ttgtggaaca ctcatagtcc attgttttag ctactcatgg ttgaaggctg
      661 acttagagaa agcaggacaa gaaaatgaac gttattttct tctacttcat tgcttgcaag
      721 gaggagtttt cacaaggtat tggtttgcct tgagaacggg ttaccatgtg gttttcaaac
      781 acagcgacag gaagagtaat tttatggagg agcaaacgga tcctcacaaa gaagcaatag
      841 acatggccac cgacttgagc atgctcaggc tgtttgagac ctacctggaa ggctgcccgc
      901 aactcattct ccagctctat gcctttctgg agtgtggcca ggcaaattta agtcagtgca
      961 tggtcatcat ggtttcctgc tgtgctattt cttggtcaac tgttgactat caaatagctt
     1021 taagaaaatc attgcccgat aaaaatcttc tccgaggact ctggcccaaa ctcatgtatc
     1081 tcttttacaa gttgcttacc ttgttatcct ggatgctgag tgttgtactt ctgctgttcg
     1141 tagatgtgag ggttgctttg cttctgctat tatttctttg gatcacaggc ttcatatggg
     1201 catttataaa ccatactcag ttttgtaatt ctgtaagtat ggagttctta tataggattg
     1261 tggttggatt catccttgtg tttacatttt ttaatatcaa ggggcagaat accaaatgcc
     1321 caatgtcttg ttattatact gtaagagtgc taggcaccct gggaatcttg actgtattct
     1381 ggatctaccc tctttctatc tttaactctg actattttat ccctattagt gccaccatag
     1441 ttcttgctct tctccttggg attatttttc ttggtgttta ttatggaaat tttcacccaa
     1501 atagaaatgt agaaccacaa cttgatgaaa ctgatggaaa agcacctcag agagattgta
     1561 gaataagata ttttctaatg gactaacttg tgaattcatg agaaatattt tatttttttt
     1621 gtttcattgc ctagtaaaaa aaatgtctgt catatgtatg tgttgttact tagtttatca
     1681 cctctgtctg aaatgagtta tggcacatgg tgaatgagag catagtaata ttttatggtt
     1741 taaaataatt tcttctttgt gttgctgagg atcaggcctg cacatgctat gtaaatattc
     1801 taccactgag ttgcaccccc agccatctcg ctggttccaa aagtcttgag tgttgagata
     1861 gttgctttct gtctgataga gctgccatgt tgttcctcaa gtggaataaa caatgtggtc
     1921 ccataa
//
