LOCUS       NM_173393               2555 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus X-linked Kx blood group related 6 (Xkr6), mRNA.
ACCESSION   NM_173393
VERSION     NM_173393.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Suzuki,J., Imanishi,E. and Nagata,S.
  TITLE     Exposure of phosphatidylserine by Xk-related protein family members
            during apoptosis
  JOURNAL   J Biol Chem 289 (44), 30257-30267 (2014)
   PUBMED   25231987
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC120788.7, AY534252.1 and AC118607.12.
            
            On Apr 27, 2010 this sequence version replaced NM_173393.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on homologous transcript alignments.
            
            CCDS Note: The N-terminus' coding region has been updated based on
            partial mouse mRNA AY534252.1, and extended based on aligning
            homologous mRNAs, including human AY534244.1 and rat AY534260.1.
            The new extended N-terminus is well-conserved and is supported by
            homologous proteins, including human NP_775954.2 (CCDS5978.2), rat
            NP_001012042.1, X. tropicalis NP_001029115.1, zebrafish
            NP_001012257.1, and Fugu NP_001027884.1. There is a lack of mouse
            transcript support for this new extended 5' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY534252.1, SRR13948564.2048007.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849379
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-294               AC120788.7         143072-143365
            295-1361            AY534252.1         1-1067
            1362-1362           AC118607.12        75270-75270         c
            1363-2555           AY534252.1         1069-2261
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 33.34 cM"
     gene            1..2555
                     /gene="Xkr6"
                     /gene_synonym="2700008G24Rik; Xrg6"
                     /note="X-linked Kx blood group related 6"
                     /db_xref="GeneID:219149"
                     /db_xref="MGI:MGI:2447765"
     exon            1..755
                     /gene="Xkr6"
                     /gene_synonym="2700008G24Rik; Xrg6"
                     /inference="alignment:Splign:2.1.0"
     exon            756..952
                     /gene="Xkr6"
                     /gene_synonym="2700008G24Rik; Xrg6"
                     /inference="alignment:Splign:2.1.0"
     exon            953..2538
                     /gene="Xkr6"
                     /gene_synonym="2700008G24Rik; Xrg6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2139..2144
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Xkr6"
                     /gene_synonym="2700008G24Rik; Xrg6"
                     /note="hexamer: AGTAAA"
     polyA_site      2157
                     /gene="Xkr6"
                     /gene_synonym="2700008G24Rik; Xrg6"
                     /note="major polyA site"
ORIGIN      
        1 atggcggcga aatccgatgg cggtggcgtg ggggtgggct tcgcccagct gcacaacctg
       61 gacgaggcgg tgggcagcgg cgaggaggac ggggagcccg ggggaggcgg ctgcggcggc
      121 ggcgacggca gcgagcccgg cgagagcagc tcgctgcaca tctgccactg ctgcaacacc
      181 tcctcgtgct actggggctg ccgctccgcc tgcctgcgct cgctgctggg caagaagccg
      241 cgccgcagcg ccgccgccgc cgacgggggg gaccagccgc tgcagccgcc cggggccgcc
      301 ggccgccacc ccccgacgcc ctcggccggc cgaccgcagc ccgcgtcgcc gcaggtggag
      361 cggccgtggc ttgactgcct gtggatcgtg ctcgcgctgc tggtgttctt cggggacgtg
      421 ggtaccgacc tgtggctggc cctcgactac taccgcaagg gggactacgg ctgcttcggg
      481 ctgaccctgt tcttcgtgct ggtgccgtcg ctgctggtgc agagcctgag cttccgctgg
      541 ttcgtgcagg actacacggg cggcgggcta ggcgccgtgg aggggctcag cagccgggga
      601 cccccaatga tgggggccgg ctacggccac ggcgcggccc gcggcggccc gggtgcgggg
      661 ggctcggcca ccccgggggc gcagcgtctg tgccgcctct ccgtgtggat ctggcagtcg
      721 gtcatccacc tgctgcagat ggggcaggtg tggaggtata tccgcaccat gtacctgggg
      781 attcagagcc agcggcagaa ggaacaccag cggcgcttct actgggctat gatgtacgaa
      841 tatgcagatg tcaacatgct gcgcctcctg gagacctttc tggagagcgc cccccaactg
      901 gtgctacagc tctgcataat gatccagaag aacagtgcag agacgctgcc ctgtgtctcc
      961 tctgtgactt ccctgatgtc cctggcttgg gtgctagctt cctatcacaa gctgctgcgg
     1021 gactccaggg acgacaagaa gagcatgagt tacagagggg ccctcatcca cctcttctgg
     1081 cgcctcttca ccatctcatc ccgagttatc tctttcgccc tctttgcttc catcttccag
     1141 ctgtatttcg ggatcttcgt ggtggtgcac tggtgcgcca tggccttctg gatcatccat
     1201 ggtgggacag acttctgcat gtccaagtgg gaggagatcc tcttcaacat ggtggtaggg
     1261 atcgtgtaca ttttctgctg gtttaacgtc aaggaagggc ggactcgata ccgaatgttc
     1321 gcatactata cgatagtctt gaccgagaat gctgccttga cgttcctttg gtatttttac
     1381 agaaatccgg agagcactga ctcctatgcc gtgccagcac tgtgttgtgt cttcgttagc
     1441 tttgtggctg ggattacgct catgctctta tactatggcg tgttgcatcc catggggccg
     1501 cgggctaagg tctttgccag ctcctgttgt gccgagctgc tctggggcat ccctttgccc
     1561 cctgatgttg agcctatggc acctcagacc cctgggtacc gggggaccca ggtcacgccc
     1621 accagagccg tgacggaaca gcaggaggac ctcacggctg atacttgcct gccggtattc
     1681 caagtgagac ccatggggcc ctctaccccg tcagggcgtc cttaccaccc agaagggccc
     1741 ctgattaaga ttgacatgcc aagaaagcga tacccggcct gggatgcgca ctttgtagac
     1801 aggaggctgc ggaggactat taacatcctg cagtacgtca cccccaccgc agtgggcatt
     1861 cgctaccgag atgggcctct gctctatgag ctgctgcagt atgagtcttc actctagaac
     1921 accttgaccc agattgagaa ggggacctta agtttggttg cggtcaacgc cgcctgcaag
     1981 aaatataacc ctcccttccc ccaatacaca gaaccaccac caccaccgcc acaccaacaa
     2041 caccaacact acaaaaaaga tcaataagtc acatcccctt cagataagct ttctttccag
     2101 tcactatatg tatacaaaga tattctctat gttttgtaag taaaaacaga aagaaaacct
     2161 ttcttttgtt ttttacacat aagaaacagt attgaaaaaa aatgaaataa tcccacactg
     2221 cagttcctag gatggagaag gaagagctaa tctcctctcc aaaacaaaca aacaaacaaa
     2281 caaacaaaag ttttatactt tacaccaagt gtagatcatt tatgggattg gtgctgattg
     2341 agagaacaaa gcaaagcaaa acaaaacaaa caaaaacctt caactgcctt acgcccttag
     2401 gtgctgagtt tctttaggta ctgtcatgtt tcctcacaga aaactctctg gtgacttttg
     2461 taccaggaga gggaaaaaaa attaaataat caaatgaaac aaaatctact gacaaagcaa
     2521 ataaacgaaa acagcaaaaa aaaaaaaaaa aaaaa
//
