LOCUS       NM_026156               2654 bp    mRNA    linear   ROD 04-FEB-2025
DEFINITION  Mus musculus XPA binding protein 2 (Xab2), mRNA.
ACCESSION   NM_026156
VERSION     NM_026156.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Shen,C.L., Tsai,Y.Y., Chou,S.J., Chang,Y.M. and Tarn,W.Y.
  TITLE     RBM4-mediated intron excision of Hsf1 induces BDNF for cerebellar
            foliation
  JOURNAL   Commun Biol 7 (1), 1712 (2024)
   PUBMED   39738787
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2654)
  AUTHORS   Goulielmaki,E., Tsekrekou,M., Batsiotos,N., Ascensao-Ferreira,M.,
            Ledaki,E., Stratigi,K., Chatzinikolaou,G., Topalis,P., Kosteas,T.,
            Altmuller,J., Demmers,J.A., Barbosa-Morais,N.L. and Garinis,G.A.
  TITLE     The splicing factor XAB2 interacts with ERCC1-XPF and XPG for
            R-loop processing
  JOURNAL   Nat Commun 12 (1), 3153 (2021)
   PUBMED   34039990
  REMARK    GeneRIF: The splicing factor XAB2 interacts with ERCC1-XPF and XPG
            for R-loop processing.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2654)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 2654)
  AUTHORS   Masuda,T., Kai,N., Sakuma,C., Kobayashi,K., Koga,H. and Yaginuma,H.
  TITLE     Laser capture microdissection and cDNA array analysis for
            identification of mouse KIAA/FLJ genes differentially expressed in
            the embryonic dorsal spinal cord
  JOURNAL   Brain Res 1249, 61-67 (2009)
   PUBMED   19026994
REFERENCE   5  (bases 1 to 2654)
  AUTHORS   Zhang,X.M., Chen,B.Y., Ng,A.H., Tanner,J.A., Tay,D., So,K.F.,
            Rachel,R.A., Copeland,N.G., Jenkins,N.A. and Huang,J.D.
  TITLE     Transgenic mice expressing Cre-recombinase specifically in retinal
            rod bipolar neurons
  JOURNAL   Invest Ophthalmol Vis Sci 46 (10), 3515-3520 (2005)
   PUBMED   16186328
REFERENCE   6  (bases 1 to 2654)
  AUTHORS   Yonemasu,R., Minami,M., Nakatsu,Y., Takeuchi,M., Kuraoka,I.,
            Matsuda,Y., Higashi,Y., Kondoh,H. and Tanaka,K.
  TITLE     Disruption of mouse XAB2 gene involved in pre-mRNA splicing,
            transcription and transcription-coupled DNA repair results in
            preimplantation lethality
  JOURNAL   DNA Repair (Amst) 4 (4), 479-491 (2005)
   PUBMED   15725628
  REMARK    GeneRIF: XAB2 has an essential function in mouse embryogenesis.
REFERENCE   7  (bases 1 to 2654)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK002890.1.
            
            On Apr 6, 2007 this sequence version replaced NM_026156.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK002890.1, AK132434.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164140
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2654              AK002890.1         2-2655
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 1.92 cM"
     gene            1..2654
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /note="XPA binding protein 2"
                     /db_xref="GeneID:67439"
                     /db_xref="MGI:MGI:1914689"
     exon            1..69
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..2586
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /codon_start=1
                     /product="pre-mRNA-splicing factor SYF1"
                     /protein_id="NP_080432.1"
                     /db_xref="CCDS:CCDS22065.1"
                     /db_xref="GeneID:67439"
                     /db_xref="MGI:MGI:1914689"
                     /translation="MVVMARVPRSERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEF
                     KQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERA
                     FVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHP
                     LPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNY
                     QLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKAR
                     DVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARF
                     EQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATG
                     KPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYD
                     EALKLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYD
                     RILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIS
                     RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVE
                     PAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEID
                     RARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNF
                     MASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPPRAQSKIFFV
                     RSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLEQQSVPAAVFGSLKED"
     exon            70..218
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            219..342
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            343..540
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            541..675
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            676..840
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            841..985
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1137
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1257
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1389
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1521
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1635
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1798
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1799..1989
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1990..2112
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2284
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2285..2414
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2415..2524
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2525..2654
                     /gene="Xab2"
                     /gene_synonym="0610041O14Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acctggagag ccaggaagat ggtggtgatg gcgcgagttc cgcgttccga gcggccggac
       61 cttgtttttg aggaagagga ccttccctat gaggaagaaa tcatgaggaa ccagttctcc
      121 gtcaaatgct ggctccgcta catcgagttc aaacaggggg cccccaagcc ccgactcaac
      181 cagttgtatg agcgggcact caaactgctt ccctgcagct acaaactctg gtaccgatat
      241 ctgaaggcac gccgggcaca ggtgaaacat cgctgtgtga ctgatcctgc ctatgaagat
      301 gtcaacaact gccatgagag ggcctttgtg ttcatgcaca agatgccacg cctgtggtta
      361 gactactgcc agtttctcat ggaccaggga agggtaacac atacccgccg cacctttgac
      421 cgtgccctca gggcactgcc catcacacaa cactctcgca tctggcccct gtatctacgt
      481 ttcctgcgct cccacccact gcctgagact gctgtgcgag gctaccgtcg cttcctcaag
      541 ctgagtcctg agagcgctga ggaatacatc gagtatctca aatccagtga ccggctagac
      601 gaggctgcac agcgcctggc caccgtggtg aatgatgagc gctttgtatc caaggctggt
      661 aaatccaact accagctgtg gcacgagctg tgtgacctta tctcccagaa tccggacaag
      721 gtacagtctc tcaatgtgga tgccataatc cgtggtgggc tcacccgttt cactgaccag
      781 ctgggcaagc tgtggtgctc tttggcagac tactatatcc gcagtggcca cttcgaaaag
      841 gctcgggatg tgtatgagga ggccatccgc acggtgatga ccgtgcggga cttcacccag
      901 gtgttcgaca gctacgccca gtttgaggag agcatgattg cagcgaagat ggagactgcc
      961 tctgaactgg ggcgtgagga ggaggacgat gtggacctag agctgcgcct ggcccgcttc
     1021 gaacagctca tcagccgacg gcccctgctt ctcaatagtg tccttctgcg ccagaaccca
     1081 caccacgtcc acgagtggca caagcgtgta gccctccatc agggccgccc tcgggagatt
     1141 atcaacacat acacagaggc tgtgcaaaca gtagacccct tcaaagccac aggcaagccc
     1201 cacacactgt gggttgcatt cgccaagttt tacgaagaca atggacagct ggatgatgct
     1261 cgtgtcatcc tagagaaggc caccaaggtg aacttcaagc aggtggatga cctggcaagt
     1321 gtgtggtgcc agtgtgggga gctagagctc aggcacgaga attacgatga ggccttaaag
     1381 ctgctgcgga aagccacggc tttgcctgcc cgccgagctg agtactttga tggttcagaa
     1441 cctgtgcaga accgtgtata taagtcgctg aaggtgtggt ccatgcttgc cgacttggag
     1501 gaaagcctgg gcactttcca gtcaaccaag gccgtgtatg accgaatcct ggacctgcgc
     1561 atagccacgc cacagatcgt tattaactat gccatgttcc tggaggagca caagtacttt
     1621 gaggagagct tcaaggcata tgagcgtggc atctcactgt tcaagtggcc caatgtttca
     1681 gacatctgga gcacctacct gaccaaattc atctcgcgct atgggggccg aaagctggag
     1741 cgtgcacggg atctctttga gcaggcactc gatggctgcc caccaaaata tgccaagact
     1801 ttatacctgc tctacgcaca gctggaggag gagtggggcc ttgcccgcca tgccatggct
     1861 gtgtatgacc gtgcgaccag ggcagtggag ccagcacagc agtacgacat gtttaacatc
     1921 tacatcaagc gagctgctga gatctatggc gtcacccaca ctcgtggcat ctaccagaag
     1981 gccattgagg tgctgtctga tgagcatgcc cgtgagatgt gcctgcggtt tgcagacatg
     2041 gagtgcaagc tcggtgaaat cgaccgcgcc cgggccatct acagcttctg ctcccagatc
     2101 tgtgatcccc ggacaactgg ggcattctgg caaacatgga aggactttga ggttcggcac
     2161 ggcaatgagg ataccatcag ggagatgctg aggatacggc ggagtgtgca ggccacatac
     2221 aatactcagg tcaacttcat ggcttcacag atgctcaagg tgtcgggcag tgccacaggc
     2281 accgtgtctg acctggctcc tgggcagagt ggcatggatg acatgaagct gctggaacag
     2341 agagcagaac agctggcagc tgaggcggag cgggaccagc cccccagggc ccagagcaag
     2401 atcttctttg tgaggagtga tgcatccagg gaggaattgg cagagctggc tcagcaggcc
     2461 aaccctgagg agatccagct gggcgaggat gaggacgagg acgagatgga cctggagccc
     2521 aatgaagtcc gactggaaca gcagagtgta ccagctgctg tgttcgggag cctaaaggaa
     2581 gactgactcc ctccacactt tttcttccat ggtcactccc ccataactac ccttctaata
     2641 catcccctct ttgt
//
