LOCUS       XM_006518923            5756 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus wingless-type MMTV integration site family,
            member 5A (Wnt5a), transcript variant X1, mRNA.
ACCESSION   XM_006518923
VERSION     XM_006518923.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006518923.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5756
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..5756
                     /gene="Wnt5a"
                     /gene_synonym="8030457G12Rik; Wnt-5a"
                     /note="wingless-type MMTV integration site family, member
                     5A; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 4 ESTs, 1041 long SRA reads, 25
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 17 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:22418"
                     /db_xref="MGI:MGI:98958"
     CDS             67..1248
                     /gene="Wnt5a"
                     /gene_synonym="8030457G12Rik; Wnt-5a"
                     /codon_start=1
                     /product="protein Wnt-5a isoform X1"
                     /protein_id="XP_006518986.1"
                     /db_xref="GeneID:22418"
                     /db_xref="MGI:MGI:98958"
                     /translation="MFVIAGVPRAQDPSEKPIGILSPGVALGTAGGAMSSKFFLMALA
                     TFFSFAQVVIEANSWWSLGMNNPVQMSEVYIIGAQPLCSQLAGLSQGQKKLCHLYQDH
                     MQYIGEGAKTGIKECQYQFRHRRWNCSTVDNTSVFGRVMQIGSRETAFTYAVSAAGVV
                     NAMSRACREGELSTCGCSRAARPKDLPRDWLWGGCGDNIDYGYRFAKEFVDARERERI
                     HAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVG
                     DALKEKYDSAAAMRLNSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQ
                     GRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVC
                     K"
ORIGIN      
        1 agggggtgag ggactggaag ttgcaggaaa cctggtaccc gggctttgac tcaacagcat
       61 tgagacatgt ttgtaatcgc tggcgtgccc cgcgcgcagg atcccagcga aaagcccatt
      121 ggaatattaa gcccgggagt ggctttgggg accgctggag gtgccatgtc ttccaagttc
      181 ttcctaatgg ctttggccac gtttttctcc ttcgcccagg ttgttataga agctaattct
      241 tggtggtctc taggtatgaa taaccctgtt cagatgtcag aagtatatat cataggtgca
      301 cagcctctct gcagccaact ggcaggactt tctcaaggac agaagaaact ctgccacttg
      361 tatcaggacc acatgcagta cattggagaa ggtgcgaaga caggcatcaa ggaatgccag
      421 taccagttcc ggcatcggag atggaactgc agcacagtgg acaatacttc tgtctttggc
      481 agggtgatgc aaataggcag ccgagagacg gccttcacgt acgcggtgag cgcagctggg
      541 gtggtgaacg ccatgagccg agcatgccgg gagggcgagc tgtctacctg tggctgcagc
      601 cgcgctgcgc gccccaagga cctgcctcgg gactggttgt ggggcggctg cggagacaac
      661 atcgactatg gctaccgctt cgccaaggag ttcgtggacg ctagagaaag ggaacgaatc
      721 cacgctaagg gttcctatga gagcgcacgc atcctcatga acttacacaa caatgaagca
      781 ggccgtagga cagtatacaa cctggcagat gtagcctgta agtgtcatgg agtgtctggc
      841 tcctgtagcc tcaagacgtg ctggctgcag ctggcggact tccggaaggt gggcgatgcc
      901 ctcaaggaga agtatgatag cgcggcggcc atgaggctca acagccgggg caagctggtg
      961 caggtcaaca gccgcttcaa ctccccgacc acgcaggacc tggtctacat cgaccccagt
     1021 ccggactact gtgtgcgcaa cgagagcact ggctcgctgg gcacgcaggg acgcctgtgc
     1081 aacaagacct cagaggggat ggacggctgc gagctcatgt gctgtgggcg tggctatgac
     1141 cagtttaaga cagtgcagac cgaacgctgt cattgcaagt ttcactggtg ctgctatgtc
     1201 aaatgcaaga agtgcacgga gattgtggat cagttcgtgt gcaaatagtg gtgtgcctgc
     1261 ccttcaccca gtcccactcc caggacccac ttatttatag aaagtacagt gcttctggtt
     1321 ctttttattt ctcccccaag aattgcagct ggaaccatgt gttttgtttt gttttatttt
     1381 gttttttctt ttctgttacc atctaagaac tctgtggttt attattaata ttataattaa
     1441 tatttggcaa tagtggggga aactaagaaa aatatttatt ttgaggatct ttgcaaagtt
     1501 agtacaaaat ttctttcttc tgatgctaca ggataaaggg gaaaaactat gtattcgaac
     1561 ttagctgtgc agttgggggt tcacatctag aaggtgtagg agccattttc ttctcaaaca
     1621 gagagtcctt tgagatgggt ggtatccagg tgaaggagga ggtacagacc catgaataac
     1681 agttcctgtg accaaaatga attgcaggtg ctctggtaca aaagatctta aatatagata
     1741 tattaaatat acatatatgc caaaaataca gaatatgaga cactccctaa cccagaggtt
     1801 accagcctgg ttttgtgggt tttttgtttt gttttgtttt ttcttttttt gggttttgtt
     1861 tgtttgtttg tttgtttgta tttttggtgt gtgtgtgtgt gtatttctag aatgatcttt
     1921 tagaaggtac aagcaagaat ctcatatctt cagaagcagg catatcatgt atgttactgt
     1981 gtcccaccta cagatactcc attcatgaat gggccttttt ctaacagttc atgaatattg
     2041 gggagccggt gggctggggg agggaggtcc ccagaaatta gaaaacttga agtttcctac
     2101 attgaggcca taatcttgtg ttagcccagc tgattcttaa taccagactt ttagatccat
     2161 aaaggaattt ttgactaaaa aaaaaaaatc ttgttttgaa agccatctta ttttcttaaa
     2221 aatgaaaaat tacccatgaa tcccatttgc aacccctcac ccccacaggc aacaagaaag
     2281 tcccatgtag ttgagcactg cgaacacctc tgtgaggaga tgatggcagc catcttcctg
     2341 catgatccca tgccctttct ggactctctg ctggccatgc ttccgaatgg cagccctggt
     2401 ggacactcac tgctggtagg gcagaaaatg tacacgagga gccatgttca gaaccagcca
     2461 cttaggggtt gttctctgag gcttttcttt ggaggtacgg taacttgatg tgttttgatg
     2521 atatctcttg gcccagggag tccacagagg tgttgcagct gtttggttgt tatcctcctg
     2581 cgtttagact ttccatttgt gcttttccta ttaccctgca ggtgtaccct aaaactgttc
     2641 ctagtgtact tgaacagttg catttataag gggggatgtg gtttaatggt gcctgatatc
     2701 tcagtttttt tgtatataac atatatataa atatacatat ataaatatag atataattat
     2761 atctcagtgc agtctgggat ttagacctac agttttctct gggcttgctc tctgcctgga
     2821 gtatcgtcct tcattgcagt ccaattggga tttctttttt tccaaaaatt ttgagtctta
     2881 acattgacct gtgacaggat cctaccacga ataccaggaa gcaagctaag actcggagga
     2941 agctctcagg gctcatgtcc tgaatgtatg ttggttagaa agtagccttt ctgcttcctg
     3001 cccatggcca gttctccacc ctctctttgg tgttctttgt ggggagggca ctgtggtttg
     3061 tcgcagccct ggacttcgag aggctcccag aacccaggat caccagcctc ctgtctgttt
     3121 gcttcactcc tttcccaggg aggacttggg actgtcctgt ctgacaggac ggatctgagt
     3181 tcccgaagca aaccagctca ccacatagat agctagttta aacaatgttt taaaataagg
     3241 gcacctctgt ttcaaaagtg acatctgctg tgttgttttc gaggcctgat actcttacaa
     3301 ggtttgaaaa aaaatgtgtg tatccattca tgggcttggt agccttctgg tcacctcagt
     3361 cctgtggctc ttaacttatt gcccaacaat attcatttcc cctcagctac aatgaattgc
     3421 aagcaaaaga tgttgaaaaa aagcactaat ttagtttaaa atgtcacttt ttggttttta
     3481 ttctacaaaa accatgaagt tctctctctc tctctctctc tctcttattt gttaaatcag
     3541 attatgttct ttttttgttt ttgtttttag tgattcatgt ttatgagcag agtggagttt
     3601 aacaatccta gctttaaaaa aaacctattt aatgtaagat attctacgca tccttcagat
     3661 attttgtata tcccctatgg cctttattct gtacttttaa tgtacatatt tctgtcttgt
     3721 gtgatttgta tatttcactg gttaaaaaaa agaacattga aaggcttatg ccaatggaag
     3781 atagaatata aaataaaatg ttacttgtat attggtaaga ggtttcagtt gtccttcagc
     3841 taattcatgt agagaaatat ttttagttga agccacaaga gacagcttag ggcagttatg
     3901 tgttcaaata acagaagaac agactttttt ttttttttta aaccaaaccc aaactgttgg
     3961 gaaacctcaa tagagctcta tatgtattgg aacaaaagtg gaattctctt ctcctatata
     4021 tgttccttca aaaagagaga gagaatcaag cagatggctt aaagctggtc acaggattgc
     4081 tcacattctt ttggcattat gcatgcgact taattgtttg agagtgtgtt gctattgtaa
     4141 catcccagag atgaatcaaa aaggctcacc ctctcaccca ggagcagctt ttcagcttat
     4201 atacacatgc atgtacatgt gtgtgatatg catgtgtgca tgcatgtttg tatttttgtg
     4261 cttgccacta taactattgc acctctctat tcggtttgac tgaagagggg tcttgtggga
     4321 catctctgtg tcccagtctt tatgggaaga aagcaagggt ctgcagagaa caggaactaa
     4381 agaatccctg tgtgatgtgc aattaataga aggcctcctg ctttctggaa atgtagacca
     4441 gaatctggcc aggactgtag actgatacat tatctggtcc tttgcctttt tcttttccct
     4501 ccctgcccct ccccctcttg ctttatggat aaccttgtaa catattgaaa cctttaaagg
     4561 aaaccaagaa tgcattatta cacacacaca cacacacaca cacacacaca cacacacaca
     4621 cacactacag tagaccaaca tatagagtgt ttaaaatagc ttttctgggc aaattcaaac
     4681 aacttgtggc tctaggacgc acatctgttt ccgtttttct tcagttgtat attgaccagt
     4741 attctttatt gctaaaacat atactcgggg tagcaatgtc agcatctttt cccttcccat
     4801 cctggagagc attcaagacc ttcccagtac aggaacatca atgaagcatt tatatacagg
     4861 cggtggcaag cagaaccaca tccaaaatgg tcagtgtcgg gctctagggc aaggctatct
     4921 tgttccagtc ctgtttcttt gtgctcctga cctttggggc tgccacttcc caggacgacc
     4981 actgcctgcc cacactgtcc ccccctcccc ccggggggat tttcccaata gccagttccc
     5041 atgtgtcttt ttctgcaacg gtattcaagc caatggaacc ttcagatagg gcccaagagc
     5101 aggatgacac aacctgtgga caagagctat attaacttga tcactagtat gagctaatat
     5161 taacatgatc acccatgaaa ggcgcctgca agagctgttt agtctgaaat ataggtagag
     5221 agcggggatg gcaaggttgc ttgtaacttc tggtacatgt tgaatgcaca cacgcatgga
     5281 ggcaagctct aaatcactgc actgttactg taaagcatac tttaaaaata tttattgttt
     5341 tgaaaagcat tttctagtct tccctctctt ggtggagctg taaacaagat ggcatgttgt
     5401 gaaggttcaa gatgattttt ttttaaatcg cagaaacatt tagacaccta agaactaaaa
     5461 cttataaaag ggatctttga atttgcctgt taacatggat taatgtttac acttacagct
     5521 gatgattgga cggtgtttta tgttagggaa atgccttgtt aacgaacttc atgaagcaga
     5581 tgtaattaaa ggttgatgtg agccaatcta gaaggttgaa cagtgttttc aaagaacgga
     5641 gagacttaca ttttagacca atctttatac attttgctga gctagaaagg agataaagat
     5701 tatttatttt tgttcatatc ttgtactttt ctattaaaat cattttatga aatcca
//
