LOCUS       NM_001381990            2353 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus WD repeat domain 93 (Wdr93), transcript variant 2,
            mRNA.
ACCESSION   NM_001381990 XM_006541047
VERSION     NM_001381990.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158582.2 and AC109221.32.
            
            On Apr 21, 2020 this sequence version replaced XM_006541047.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784650.1087152.1,
                                           SRR5189685.179009.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                AC158582.2         14722-14810         c
            90-427              AC158582.2         8540-8877           c
            428-620             AC158582.2         7802-7994           c
            621-685             AC158582.2         5447-5511           c
            686-764             AC158582.2         1948-2026           c
            765-880             AC109221.32        32155-32270
            881-919             AC109221.32        35205-35243
            920-955             AC109221.32        40135-40170
            956-1040            AC109221.32        42104-42188
            1041-1212           AC109221.32        43086-43257
            1213-1283           AC109221.32        44723-44793
            1284-1370           AC109221.32        45262-45348
            1371-1490           AC109221.32        46146-46265
            1491-1704           AC109221.32        47098-47311
            1705-1768           AC109221.32        49257-49320
            1769-1925           AC109221.32        50375-50531
            1926-2118           AC109221.32        50858-51050
            2119-2353           AC109221.32        59461-59695
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 45.13 cM"
     gene            1..2353
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /note="WD repeat domain 93"
                     /db_xref="GeneID:626359"
                     /db_xref="MGI:MGI:3646885"
     exon            1..89
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            90..427
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     CDS             128..2215
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /note="isoform 1 is encoded by transcript variant 2; WD
                     repeat-containing protein 93"
                     /codon_start=1
                     /product="WD repeat-containing protein 93 isoform 1"
                     /protein_id="NP_001368919.1"
                     /db_xref="GeneID:626359"
                     /db_xref="MGI:MGI:3646885"
                     /translation="MSSFKGNQAQKRRLSVFPKGPLEIPSPTEADWPKDDEKDFVFKD
                     LDQELDSLPQPYRMINKLVDHLFNRSWEIIEERDSLREVEKNWIVPAIYHPVAEIQLD
                     KMPGGMAVSHDYLFIGGLKGFSIYNLHNCKRIYVLEKFKADVISIWATDLGNDVLIVP
                     IDEMGIVRLFYLCKDSLYHIKAINEVDDSSKQSTCLKMEISQNGDFAAFLFQGAGDVW
                     LEVYKLPKEIWLKEMEHPQSTLNQKKKAKQLQLSTPDSAVTESIETSSGPSVSSNSVQ
                     DLNISFKSDLKLSLPVFVMKIKPPKPIAGTTFKSPLEVFAKVEDYVGLGSGQNHFIKD
                     VQWEQHMETFYASYKKHLEGEWEEEPLSMATFHFFYTNSLTTMSMDVKSSSGIACVLG
                     IHWNGRHNLFFYSLNKTQKDKTEYENVWPCAAPIVMSQISSFSSYLALVCEDGVLILW
                     DLAEGFLFGVVALPEGCFCQSIHFLRFFLVHEGQNVYPDYPVKFEVMCVVLCTDASLH
                     LVTASGTQGPTSKVLVGRPVMHMEEAICAVAPVPALPGMVLIFSRSQSVTLMDVAKAE
                     VLCAFSAPTCHPQALPWKPLFAVSPHHPYFLLHGAHPHGQTTSTEDPKKSTDSVFYFN
                     FEDYLLLKDISKKCTISQMAVNFSQMLPVEKRCEQVFQKSIQMTKTQMKGREQWSRLR
                     KYSIMLQKELLKR"
     exon            428..620
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            621..685
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            686..764
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            765..880
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            881..919
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            920..955
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1040
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1212
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1213..1283
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..1370
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1490
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1704
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1705..1768
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1925
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            1926..2118
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     exon            2119..2353
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2333..2338
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /note="hexamer: AATAAA"
     polyA_site      2353
                     /gene="Wdr93"
                     /gene_synonym="EG626359"
                     /note="major polyA site"
ORIGIN      
        1 ggtagttact aaggcgacgc caagccacaa gacttgtgag tagagctgag tttcacaagg
       61 tcgtggcctt ctcccgtctt ggtttccagc tttgagttct cagaaggcct cagtgccacg
      121 tgctgcgatg tcatctttta aaggaaacca ggctcagaaa cgcaggttgt ctgtgtttcc
      181 caagggacca ctggagattc catctccaac tgaggcagac tggcctaagg atgacgaaaa
      241 ggattttgtc ttcaaggact tggatcaaga gctggattcc cttcctcagc cctatcgaat
      301 gataaacaaa ctggtggacc atctgtttaa ccggtcatgg gaaattattg aagaaagaga
      361 ctccttaagg gaagttgaga agaactggat cgtgcccgcc atctaccatc cagttgcaga
      421 aatccagctc gacaaaatgc ctggtggtat ggctgtttca catgactatc tgtttattgg
      481 aggccttaaa ggattctcaa tctataatct gcacaattgc aaaagaatat atgttttgga
      541 gaagtttaag gctgatgtta tttccatctg ggccacagat ttgggaaatg acgtacttat
      601 tgttcctatc gacgaaatgg gtattgtgag attgttttac ctgtgtaagg acagtcttta
      661 tcacatcaag gccatcaatg aagtggatga tagcagcaag cagagcacct gtctgaagat
      721 ggaaatctct cagaacgggg actttgcagc tttcctcttc caaggagccg gggatgtctg
      781 gctggaagtg tataagttgc ccaaggagat ttggctaaag gaaatggagc acccccaatc
      841 gactctaaat caaaagaaaa aagccaaaca gctgcaactg agcactcctg actctgctgt
      901 tacagaaagc atagaaacga gctcgggacc aagtgtcagc tctaactcag tccaggactt
      961 aaatatttct tttaaaagtg acttaaagtt gagtcttcca gtttttgtaa tgaagattaa
     1021 accccctaag cccatagcag ggaccacatt taaaagcccc ttggaagttt ttgcaaaggt
     1081 agaggactac gtggggctcg gctctgggca gaatcacttt atcaaggatg tgcagtggga
     1141 gcaacacatg gagaccttct atgcctccta caagaagcac ctggaagggg agtgggaaga
     1201 ggagccactc agtatggcca ccttccattt cttctatact aactccttaa caaccatgtc
     1261 aatggatgtc aagagctctt caggaatagc atgtgtcctt ggcatacact ggaatggacg
     1321 tcacaacctc ttcttctatt ccctgaacaa aactcagaag gataaaactg agtatgagaa
     1381 cgtatggccc tgtgctgcgc ccattgtaat gtctcagatc agcagcttct cctcctacct
     1441 ggccctcgtc tgtgaggatg gtgtgctcat tttgtgggac ctggctgaag gattcctctt
     1501 tggggtggtt gctctgcctg agggctgttt ctgccagagc atccacttcc tccgattctt
     1561 cctggtgcac gaaggacaga acgtgtaccc tgactaccca gtgaagtttg aggttatgtg
     1621 tgtggtgctg tgcactgatg cttccctcca cctggtgaca gccagcggga cccaaggacc
     1681 caccagcaag gtgcttgttg gcaggcctgt gatgcacatg gaagaagcta tttgtgccgt
     1741 ggccccagtc ccagccttgc ctggcatggt gctaatcttt tccaggagcc aatctgtaac
     1801 cctcatggac gtggccaagg ctgaggtcct ctgtgccttt tcggccccga catgccaccc
     1861 gcaggcgctg ccctggaagc cactgtttgc tgtatctcca caccatccat attttctgct
     1921 tcacggagcc catccacatg gtcagaccac gtctactgaa gatcccaaga agagcacaga
     1981 ttctgttttc tattttaatt ttgaggacta cctgctcttg aaagatatct ccaaaaagtg
     2041 taccatttct caaatggctg tgaacttctc ccagatgttg ccagtggaga aaagatgtga
     2101 gcaggtcttc cagaagagca tccagatgac aaagacccag atgaaagggc gggagcagtg
     2161 gtccaggctg cggaagtact ccatcatgct ccagaaagaa ctcttaaaga ggtgagcacc
     2221 cgggacgcca tagctcctgc tcaggacacc aagactccat ggagccagcg gggccgaggt
     2281 attgaggacc ttcaaatact gagtgactcg tggagcttag atgtgtcatt taaataaaca
     2341 ggctggcagc tgc
//
