LOCUS       NM_001362119            1224 bp    mRNA    linear   ROD 11-FEB-2025
DEFINITION  Mus musculus WD repeat domain 54 (Wdr54), transcript variant 2,
            mRNA.
ACCESSION   NM_001362119 XM_006506726
VERSION     NM_001362119.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Weber,J.S., Jang,W., Simin,K., Lu,W., Yu,J. and Meisler,M.H.
  TITLE     High-resolution genetic, physical, and transcript map of the mnd2
            region of mouse chromosome 6
  JOURNAL   Genomics 54 (1), 107-115 (1998)
   PUBMED   9806835
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY232896.1 and BC083332.1.
            
            On Apr 6, 2018 this sequence version replaced XM_006506726.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 both encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083332.1, SRR17253011.8777321.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                BY232896.1         1-26
            27-1224             BC083332.1         1-1198
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 35.94 cM"
     gene            1..1224
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /note="WD repeat domain 54"
                     /db_xref="GeneID:75659"
                     /db_xref="MGI:MGI:1922909"
     exon            1..65
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            66..136
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            137..359
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             138..1142
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /note="isoform a is encoded by transcript variant 2; WD
                     repeat-containing protein 54"
                     /codon_start=1
                     /product="WD repeat-containing protein 54 isoform a"
                     /protein_id="NP_001349048.1"
                     /db_xref="CCDS:CCDS20275.1"
                     /db_xref="GeneID:75659"
                     /db_xref="MGI:MGI:1922909"
                     /translation="MFRRERSIPLRSSAAALSNNLSVLQLPARDLTHFGVVHGPSAQL
                     LSAAPEGVPLAQRQLHVKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGS
                     VMVYWHALDSGDASSVQAMFARGIAASVHFICVGTCSGRVLVFDIPAKGPNIVLSEEL
                     AGHQTPITDIATERAQGQDGVADMVTADDSGVLCVWRSGPEFTLLTRIPGFGVPCPSV
                     QLWQGIVAAGYGNGQVRLYDASTGALHVQISAHARTISALDLAPEVGKLLSAAEDTFV
                     HIWKLNRNPESGSIEVEHCHGECISDTQVCGARFCDPLGSSFAVTGYDLAEILRFGTV
                     "
     exon            360..422
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            423..489
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            490..543
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            544..671
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            672..772
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            773..935
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1010
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1198
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1176..1181
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1198
                     /gene="Wdr54"
                     /gene_synonym="1700030E05Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtgcgtcggt gcgtcgtctc tatggtggcg gcggatttgg agggacctta ggatcgcggc
       61 gtcaggtagc taagctgtgg gaagaagagc tggagaccac attctgcatt ttagctgaga
      121 cgttccgtac tagcagaatg ttccgccgcg agcgctccat cccacttcgt agctctgccg
      181 ccgccctgtc taacaacctc agtgtactgc agctgccagc ccgtgatctc acgcattttg
      241 gggtggttca tggaccgagc gcccagcttc tcagtgctgc ccctgagggt gtgcccttgg
      301 cccagcgcca gctccacgtt aaagagggtg ctggagtgag tcccccactt atcactcagg
      361 ttcactggtg tgtcctcccc ttcagagtac tgctggtcct cacctcgcat cgagggatac
      421 agatgtatga gtctgatggc tccgtcatgg tttattggca cgccttggac tcaggcgatg
      481 cttcttcagt acaggctatg tttgcccgag gaattgctgc cagcgtccac ttcatctgtg
      541 tgggaacgtg ttccggtcga gtactggtct ttgatatccc cgctaagggt cccaacattg
      601 tactcagcga ggaactggct gggcaccaga caccaatcac agatattgcc actgagcgtg
      661 cccaggggca ggatggtgtt gctgacatgg tgacagcaga tgactcgggt gtcctgtgtg
      721 tctggaggtc gggacctgag ttcaccttac tgacccgaat accaggattc ggggtcccat
      781 gcccctctgt gcagctgtgg caggggatcg tggcagcagg gtatggaaat gggcaagtgc
      841 gcctgtatga tgccagcaca ggggccctcc acgtccagat cagtgcccac gcccggacca
      901 tctctgccct ggacctcgct ccagaggtcg gcaagctact gtctgcagct gaggacacct
      961 ttgtgcacat ctggaagctg aacagaaacc cagaaagtgg ctctattgag gtggaacact
     1021 gccatggtga atgtatttct gacacccagg tgtgtggtgc tcggttctgt gatccattgg
     1081 gcagctcctt tgctgtgaca ggttatgacc tggctgagat cctgagattt ggcactgtct
     1141 gagagaggag cagccttccc gtctcccttg gtatttataa agtattcccc cccatcaaaa
     1201 aaaaaaaaaa aaaaaaaaaa aaaa
//
