LOCUS       NM_175639               3450 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Mus musculus WD repeat domain 43 (Wdr43), mRNA.
ACCESSION   NM_175639 XM_001005092 XM_917905 XR_033428 XR_034941
VERSION     NM_175639.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3450)
  AUTHORS   Tscherner,A.K., McClatchie,T., Macaulay,A.D. and Baltz,J.M.
  TITLE     Relationship of quantitative reverse transcription polymerase chain
            reaction (RT-PCR) to RNA Sequencing (RNAseq) transcriptome
            identifies mouse preimplantation embryo reference genesdagger
  JOURNAL   Biol Reprod 109 (5), 601-617 (2023)
   PUBMED   37669129
REFERENCE   2  (bases 1 to 3450)
  AUTHORS   Bi,X., Xu,Y., Li,T., Li,X., Li,W., Shao,W., Wang,K., Zhan,G.,
            Wu,Z., Liu,W., Lu,J.Y., Wang,L., Zhao,J., Wu,J., Na,J., Li,G.,
            Li,P. and Shen,X.
  TITLE     RNA Targets Ribogenesis Factor WDR43 to Chromatin for Transcription
            and Pluripotency Control
  JOURNAL   Mol Cell 75 (1), 102-116 (2019)
   PUBMED   31128943
  REMARK    GeneRIF: RNA targets ribogenesis Factor WDR43 to chromatin for
            transcription and pluripotency control.
REFERENCE   3  (bases 1 to 3450)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   4  (bases 1 to 3450)
  AUTHORS   Barker,N., van Es,J.H., Kuipers,J., Kujala,P., van den Born,M.,
            Cozijnsen,M., Haegebarth,A., Korving,J., Begthel,H., Peters,P.J.
            and Clevers,H.
  TITLE     Identification of stem cells in small intestine and colon by marker
            gene Lgr5
  JOURNAL   Nature 449 (7165), 1003-1007 (2007)
   PUBMED   17934449
REFERENCE   5  (bases 1 to 3450)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3450)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   7  (bases 1 to 3450)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY736005.1, AK152321.1 and AK129031.1.
            
            On or before Jun 25, 2009 this sequence version replaced
            XR_033428.1, XM_917905.3, XM_001005092.2, XR_034941.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK129031.1, SRR1660813.49156.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                BY736005.1         1-14
            15-2623             AK152321.1         5-2613
            2624-3450           AK129031.1         2542-3368
FEATURES             Location/Qualifiers
     source          1..3450
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 41.87 cM"
     gene            1..3450
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /note="WD repeat domain 43"
                     /db_xref="GeneID:72515"
                     /db_xref="MGI:MGI:1919765"
     exon            1..271
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..2080
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /codon_start=1
                     /product="WD repeat-containing protein 43"
                     /protein_id="NP_783570.1"
                     /db_xref="CCDS:CCDS50180.1"
                     /db_xref="GeneID:72515"
                     /db_xref="MGI:MGI:1919765"
                     /translation="MAAGGGGSYDPLAPAGVPCAFSPDSQAYFALASSDGQLRVWETA
                     NNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESHQRKKRKSEVTGTKDQADLLALGTA
                     VGSILLYSTVRGELHSKLTSGGHENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTCKV
                     KCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTT
                     IRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYVDLTL
                     SENKEEPVKLAVVCRDGQVHLFEHILNGHCKKPLTSNCTIQIATPGKGKKVTPKPIPI
                     LAASFCLDKMSLLLVYGNWFQPTIERVALNSKDTHICLERDISNCWAPTVETAITKVK
                     TPVMNSEAKVLVPGIPGHHAPIKLPPAQPKEAENKRKLGSTEATIEERLGAMDLDRKG
                     RKDDLQTNSFAVLLTQGLESNDFEILNKVLQTKNVNLIKRTVLRIPLRVVIPLLQELT
                     KRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRVKTFQKLSNL
                     HGKLILLVTQVTASEKSKKMTSPGQKAKLVYEEESSEEESDDEVPEKDSDDNWDEDED
                     KDSEKDEGVDEDNEEEDEDMEDKEENEEDREVSSEKELNGDSDLDPENESEEE"
     exon            272..409
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            410..531
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            532..652
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            653..789
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            790..892
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            893..957
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1129
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1216
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1217..1348
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1349..1477
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1478..1564
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1565..1596
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1597..1660
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1774
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1775..1844
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1845..1894
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     exon            1895..3450
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2288..2293
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /note="hexamer: AATAAA"
     polyA_site      2311
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /note="major polyA site"
     regulatory      3428..3433
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /note="hexamer: AATAAA"
     polyA_site      3449
                     /gene="Wdr43"
                     /gene_synonym="2610318G08Rik; mKIAA0007; Wrd43"
                     /note="major polyA site"
ORIGIN      
        1 gcctgcgccc gggcgaacac gtggctgccg cggagccaga gcagcaatgg cggccggagg
       61 cggcggtagc tacgacccct tggccccggc gggggtcccc tgcgccttct cgccggacag
      121 tcaagcctac ttcgctttag cctctagtga cggtcagctg cgagtatggg agaccgccaa
      181 caaccggctg caccaggagt acgtgccttc cgcgcacctc agcggtacct gcacctgcct
      241 ggcctgggcg ccagcacggc tgcaggccaa ggaaagtcat caaaggaaaa aaaggaaatc
      301 ggaagttaca ggaacaaagg accaggctga cctgttggct cttggcacgg cagttggtag
      361 cattttattg tatagtacag taagaggaga gttgcacagt aaattaacaa gtggtgggca
      421 tgaaaacaga gtgaattgca tacagtggca tcaagacaat gactgcttat atagttgttc
      481 agatgataag tatattgtgg agtggagtac acagacatgc aaagtaaagt gcaaatggaa
      541 aggagacaat agcagcgtca gttccctgtg tatcagccca gatggaaaga tgttactttc
      601 agctggtcga acaatcaaac tatgggtttt ggagaccaaa gaagtctaca gacacttcac
      661 aggacatgcg acacctgttt cgtcgcttag gttcacgacc atcagaccta atgagagcca
      721 gccttctgat gggattacag gcctttattt cttgtctgga gccgtacacg accgattact
      781 taatgtctgg caggtccggt cagagaacaa ggagaagagt gcagtgatgt cttttacagt
      841 cacagacgag cctgtctatg ttgacttgac tttgtcagaa aacaaagaag agcctgtcaa
      901 gttagctgtt gtttgcagag atggtcaagt tcatcttttt gaacacatat taaatggaca
      961 ttgcaaaaag cccttgactt caaattgcac aatccagatc gcaacacctg gaaagggcaa
     1021 gaaagtaaca ccaaaaccca tccctattct agcagctagc ttttgcttag acaaaatgtc
     1081 cttattgctg gtgtatggaa attggtttca gcctaccatt gagcgagtgg ctttgaactc
     1141 caaagatact catatatgtt tggaaagaga tatttcaaat tgctgggctc caacagtaga
     1201 aactgctata accaaggtaa aaacaccagt aatgaattct gaagcaaaag ttttggtgcc
     1261 cgggattcct ggacatcatg cgccaatcaa gctgccgccc gcccagccca aggaggccga
     1321 gaacaagagg aaattgggca gtactgaggc taccatcgag gagcgccttg gtgccatgga
     1381 cctagataga aaaggaagga aggacgacct tcagacaaac agctttgcag tcctccttac
     1441 acagggctta gaaagcaatg attttgaaat attaaacaaa gtgcttcaaa ctaagaatgt
     1501 aaacctaata aagaggactg tgctgaggat accgttgcgt gttgttattc cactgttgca
     1561 agagcttacg aagaggttac agggacatcc caatagtgct gctttaatga ttcagtggct
     1621 gaagtgtgtg ctgacgatcc atgcatcata cctatctacg ttgcctgacc tagtagagca
     1681 gctgggaaca ctctaccagc tgatggaaag cagagtcaaa actttccaga aactctcaaa
     1741 cctgcatgga aaactcattc ttctcgtcac gcaagttaca gcatcagaaa aatcgaaaaa
     1801 aatgacctct cccggacaga aggcaaaatt ggtgtatgaa gaagagtctt ctgaggagga
     1861 gtctgacgat gaggttccag agaaggattc tgatgataat tgggacgaag atgaagacaa
     1921 agacagtgaa aaagatgagg gcgttgatga agacaatgag gaggaagatg aggacatgga
     1981 agacaaagaa gagaatgagg aggacagaga agtgtcaagt gaaaaagaat taaatggaga
     2041 ttcggattta gatcctgaaa acgagagtga agaagaatga agacagatgc agccagccag
     2101 tcacacgaga ggcctggctt gccttgccca gtgctgccta tagcatcctc ccagggaggc
     2161 ttgccctgtg ccagaaaaca agaggccacc atatgcttcc aagttgacag gcaattccca
     2221 cacttccttc ctgtcctgag tgccccagac tttaactgtg taaataagag tgtttcattc
     2281 aaatgttaat aaactttaca cagtaaatag acacactttc tgcaatgtac tgacatgagt
     2341 gtccaatata tggtatattt ttctaatata atactctggt atgattggtt ctgttggaaa
     2401 ctgatttagg tgaatacaga cataccatag gggtaaggaa ctgaatgctg taaaggagtc
     2461 ggttctcatc tcaggttggt atctttcatc cagtccaaaa tgcaagcggc actaatgaat
     2521 tgttcttaat ccggcacgtc taatttgaca cgttttcatg aaggaataac taagttaaag
     2581 tgaaaatggt tgtgatttac agaaataaaa tcccagtgtc cactcaatgc tggtctgact
     2641 cagatccagt tgggtggttg gagtgcttcc ccaaataacc acttattttt taaagcgtca
     2701 tgtgagatat ttttttaaac aaaacaaaat aatggtaatt aaagaagcaa agcttcagcc
     2761 atactaaggg gtttcttgtc tgcagagtgt agagactcat cagtgtacag atgagacctg
     2821 ctcatcgtgc gactgtaacc cttcagtcct agctgctttt gaagaggttt ccatttttat
     2881 ttaaattgct aatggatcag agaacaattg tttatttttt ctctttggtt ttagatatta
     2941 ataataacat tactggaatt tttttccaaa gaaactattt ttataattca ataatttaac
     3001 gttttcgttc cttttcattg cccactcttg gcagggctag ggtatctgtt tatctttcaa
     3061 aatgataaat ctgactcaag attttttatg tatgtataaa taagtatttt ggtgtgctac
     3121 acagcttttt caaattacca gtaatttgtc ttgtttctaa ggagtgggcc agtactaact
     3181 taacttggtg ttcagcaagg gatgcagacg gagagctccc ttctgcagga ctaagcagat
     3241 gcgtgtcttt cccacccgtg actgtaagaa tgctctctgg gaggacttcc accggggcag
     3301 agcaggctgc ccagccgaag cgggaagggc atgttgggca agctgctgga gcgactgatg
     3361 tacagttgtt atttgtctat aaatggagct gtttatggca atttaatacc attctctttg
     3421 taaagtgaat aaatactcat ctttacccag
//
