LOCUS       NM_029687               1206 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus WD repeat domain 38 (Wdr38), mRNA.
ACCESSION   NM_029687 XM_484992
VERSION     NM_029687.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Gao,Q., Liu,G., Huang,L., Zhang,Y., Zhang,X., Song,X. and Xing,X.
  TITLE     WDR38, a novel equatorial segment protein, interacts with the
            GTPase protein RAB19 and Golgi protein GM130 to play roles in
            acrosome biogenesis
  JOURNAL   Acta Biochim Biophys Sin (Shanghai) 55 (10), 1561-1570 (2023)
   PUBMED   37635409
  REMARK    GeneRIF: WDR38, a novel equatorial segment protein, interacts with
            the GTPase protein RAB19 and Golgi protein GM130 to play roles in
            acrosome biogenesis.
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   3  (bases 1 to 1206)
  AUTHORS   Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
            Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844588.17.
            
            On Jan 6, 2022 this sequence version replaced NM_029687.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK007246.1, BC115629.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               AL844588.17        58277-58444
            169-289             AL844588.17        59251-59371
            290-406             AL844588.17        59941-60057
            407-504             AL844588.17        60146-60243
            505-585             AL844588.17        60424-60504
            586-717             AL844588.17        60585-60716
            718-867             AL844588.17        60800-60949
            868-915             AL844588.17        61130-61177
            916-1206            AL844588.17        61262-61552
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 24.42 cM"
     gene            1..1206
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /note="WD repeat domain 38"
                     /db_xref="GeneID:76646"
                     /db_xref="MGI:MGI:1923896"
     exon            1..168
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..996
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /note="novel WD domain, G-beta repeat domain containing
                     protein (1700123D08Rik)"
                     /codon_start=1
                     /product="WD repeat-containing protein 38"
                     /protein_id="NP_083963.1"
                     /db_xref="CCDS:CCDS38119.1"
                     /db_xref="GeneID:76646"
                     /db_xref="MGI:MGI:1923896"
                     /translation="MEWAPMNIRAPTRLAVGRVRFYGQHHGEVNCSAFSPDGRTLLTA
                     SDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKC
                     LHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDF
                     SPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGLLASGSWDK
                     TICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETL
                     KGMLDVAHACIFTPDGKLLVSGAAVTR"
     exon            169..289
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            290..406
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..504
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            505..585
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            586..717
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            718..867
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            868..915
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1206
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1206
                     /gene="Wdr38"
                     /gene_synonym="1700123D08Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtttccctt tcccttctgc cctgttagga acggaggccc ctccgacggg actggtgccc
       61 gcttaggagg gagccctccg ggttatggag tgggcgccca tgaacatcag agccccaaca
      121 agattggccg tgggcagagt gaggttttat ggtcaacacc acggggaggt caactgctct
      181 gccttctctc ctgacggccg gaccctgctc acagcctcag atgatggctg tgtgtatgta
      241 tgggggacaa agagtgggcg actgctatgg agactggcag gccacagagg cccagtgaag
      301 tcttgctgtt tctctcccga tggccgcctc attgccagct cctccagtga ccacagcatc
      361 cgcctgtggg atgtggcaag gtccaagtgt ctacatgtgc tgaaaggtca ccagaggagt
      421 gtggaaactg tcagcttcag cccggactcc aagcagctgg catcaggtgg ttgggacaag
      481 agagcgattg tctgggaagt gcagtctggc cgcagggtgc acctcttggt tgggcattgt
      541 gattccatcc agagcagtga cttctctcca acctcggatt ctctggccac tggttcctgg
      601 gactcgactg tgcacatatg ggacttgcgg gcatccaccc cagttgtgtc ctaccacaat
      661 ctggagggcc acactggcaa catcagttgt ttgtgttact cagcatctgg tctcttggca
      721 tctggctctt gggacaagac catctgtgtc tggaagccta caaccaacaa cctgcctctt
      781 cagctcaagg gccataccat ttgggtgaat agtctagcct tttctcctga tgaactgaag
      841 ttagccagtg ctggttactc tcgtacggtc aaagtctggg actgcctcac agggaaatgc
      901 cttgagaccc taaagggcat gctggatgtg gcccatgcct gcattttcac cccagatggc
      961 aaactcttag tgtcaggggc tgctgtgaca agatgacaag tctgctcaaa gtcgagaacc
     1021 tctcccatgt agcttacgca caggcctaag gtaactaaga aagcagccac cagatctctg
     1081 cagcagggac taccctatcc tactccataa caaggctgtt atctgctgta ggcaagtggt
     1141 cacctggccc cccacctcgc ccaaccagcc ccaggcggcc aatgtaaaac atgaagcaga
     1201 aagcca
//
