LOCUS       XM_030252815            5541 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus tryptophanyl tRNA synthetase 2
            (mitochondrial) (Wars2), transcript variant X3, mRNA.
ACCESSION   XM_030252815
VERSION     XM_030252815.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..5541
                     /gene="Wars2"
                     /gene_synonym="5730427B17Rik; 9430020O07Rik; TrpRS"
                     /note="tryptophanyl tRNA synthetase 2 (mitochondrial);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 9 ESTs, 301 long SRA reads, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments, including 14 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:70560"
                     /db_xref="MGI:MGI:1917810"
     CDS             523..1218
                     /gene="Wars2"
                     /gene_synonym="5730427B17Rik; 9430020O07Rik; TrpRS"
                     /codon_start=1
                     /product="tryptophan--tRNA ligase, mitochondrial isoform
                     X3"
                     /protein_id="XP_030108675.1"
                     /db_xref="GeneID:70560"
                     /db_xref="MGI:MGI:1917810"
                     /translation="MVRLPRLQHLHQWKAKAAKQKHDGTVGLLTYPVLQAADILCYKS
                     THVPVGEDQVQHMELVQDLARSFNQKYGEFFPLPKSILTSMKKVKSLRDPSSKMSKSD
                     PDKLATVRITDSPEEIVQKFRKAVTDFTSEVTYEPDSRAGVSNMVAIHAAVSGLSVEE
                     VVRSSAGLDTARYKLLVADAVIEKFAPIRKEIEKLKMDKDHLRKVLLVGSAKAKELAS
                     PVFEEVKKLVGIL"
ORIGIN      
        1 atccgggcac ttcacaaagg acccgcagca actctggctc cccagaagga gagtggagag
       61 cgagtgtttt ctggcattca gcctacagga atcctccacc tgggaaatta ccttggagcc
      121 atcgagagct gggtgaactt acaggaggaa tatgacacag tgatatacag catcgtggac
      181 ctccactcca tcactgtccc ccaagacccc accgtcctcc agcagagcat cctggacatg
      241 actgctgtgc ttcttgcctg tggcataaac ccagagaaaa gtatcctttt ccagcagtct
      301 aagttaaaac aaaattatag atgatggagc tggcgagagt tttcagtcgg taaggtgtct
      361 gtgctataat cataaggacc cagactcacc cacatagaag ccagtcacac cccgtaaccg
      421 tggcgctaag tgggcagagc gactcttgca agggcccact gaccagccag tctagccaca
      481 tcggtgtctg aacacactca gttaagttgg atcctcacct gcatggtgag actgcctcga
      541 ttgcagcatt tacaccagtg gaaggcaaag gctgcgaagc agaagcatga tgggaccgta
      601 ggcctgctca cataccctgt actccaggca gcagacatcc tgtgctacaa gtccacacac
      661 gttcctgtcg gggaggatca agtccagcac atggaactag ttcaggatct agctcgaagt
      721 ttcaaccaaa agtatgggga gttctttcca ttgcccaagt ccattctcac atccatgaag
      781 aaagtgaaat ctcttcgaga cccttcttcc aagatgtcaa aatcggaccc tgacaaactc
      841 gccactgttc gaataacaga cagcccagag gagattgtac agaaattccg caaggctgtg
      901 acagacttca cgtcagaggt cacctacgag ccggacagca gagctggtgt ttccaacatg
      961 gtggcgatcc acgcggccgt gtcgggcctc tcggtggagg aggtggtgcg cagtagcgca
     1021 ggcttggaca ctgcacgcta caagctgcta gtggccgatg ctgtgattga gaaatttgct
     1081 ccaatcagga aggagattga gaaattgaaa atggataagg accacttaag aaaggtttta
     1141 cttgttggat ctgcaaaagc caaagaattg gcctctcctg tgttcgagga ggtgaagaag
     1201 ttggtgggga ttctgtagca aggtcagcca gtcactgcac tcaagtcaag gcagctttcc
     1261 tcccacagat tttagcctgt ccaaattcaa ttgagtgtga tgatcagctg catttgatga
     1321 ctgctgtcaa ttgagcaacg ttccaatccc tgaggcaggc acagctcttc cactccagtt
     1381 caatgacaca cagttttttg gtctgaagta ttcccgaaaa cgtgaacaat tactgagcca
     1441 tggcgtgtgc ttgcttgtgc agtatttact gtgcaggtgc actttgtctg tgttgtgcag
     1501 acaggtccta tgctgcaatc ctgaatccag tgggtatttg cagttcataa agagaggttc
     1561 attcttgcag ctcatgtgat gatgatgtga tgatgtttat cctcatgtat tggaatgact
     1621 tgacttgtgc tagcaaggtg gctcgggctc aaggtacctg ctgccaagct gaatagctgg
     1681 agctcaatcc acagggccag catggtggaa ggagaaactg actggcaggt tgtcctctga
     1741 cctccgcttg tctgccatgg tatgagtaca cacacacaca cacatgcgcg cctaagtaaa
     1801 aatacaataa cctacttgtt tcttaaaagg cacacactga cttacttatt tcagcaaatg
     1861 tctgtactta agtgatccag gaggtcattg gagagcatta tattgcttca gttccatcta
     1921 tttattatac agggcctgtg ttcctggttg tattcataat aagcacttct atttttacat
     1981 tcatctcagt ttagtctcac caaaccctac ctctgtggaa cacataggaa ctgaggggta
     2041 gaacatggaa ttagctgtac agtgtcacta agtaaataag aagcaagtcc aagagtgaag
     2101 gcctagctcc cctgcttcca agactggtgc tttttaagac ttctcccaaa gctctgaggg
     2161 ccaaagtttt ggacctctaa acattccagt attcagtttg gatactgaaa agataaaggc
     2221 tgaaatactg atttttgttt atgtgaactc agctaatggt tgtgtatttt aaatctggat
     2281 ccagccacct ctggtcacac ttacctttca aaaccccaaa aatgggtccc atggcctcac
     2341 ttccaaattc atgctggaga tgcctgcttg tctcggccag attccagtgg gagcgaagtc
     2401 taaagcatct gacgtttcca gtgaagggaa gcttcccgtc tcagcctgcc tcaggctctg
     2461 tgaaatcaca gagtatagct ctgcacgtcc atgttcacag ctgaaacgaa tggcagtcct
     2521 ggcttacatc ccaaggcctg tatcaagatt gattttgcag ggccagcaag atggctcagc
     2581 agaaaagggc tccttttgtg aagcaagcct gactatgtga gttcaatccc tgagatccat
     2641 gtgataaata aaggagagaa ccaactcctc aacgttgtac tgtgacttac acacacacac
     2701 acacacacac acacacacac acacaccaca atgaaatgca caggactacc cacacacaaa
     2761 aataaataaa tgtttacttt taatgttaag gttgagttca cctcgattgt cacatagaat
     2821 tggaagtagg agacactgta tcccagagtc cagattaaaa caccaactag gttcgggaaa
     2881 agggtacatt ttacttttgg ggggggtgca tgttgttttc ttaattcatt tatttattag
     2941 tgtatgtgtt tgaatgggtg agatcatgct aaggtgtgtc tgtcacggtt ggaggatgat
     3001 tagtggggtc cggttctctc cttccaccac gtaggttctg ggactcgagc tcaggtcatc
     3061 aggcacactt tcccgttggg ccagttagtt ttatcttttg caccttagtg ggagatgtct
     3121 gcagtctgag agcatcactg agtgtatttc ttttaaagat cttttttact ttcctttcgt
     3181 tttatctgtt tgcatttgtg tgtgtatgtg tgcgcgcgcg cacgtgcgca tgcatgcatg
     3241 ccacaaaaca tgtgtgatgt cagaggacag tgcaaaagct ggctttcttc caccaggtag
     3301 attccagggt tcaaactcag gctgtccggc ttagcagcag gcacccctgc ctactgaggc
     3361 agcccaccag taccttttca ccttcctttt aaagaaatct attaggaata ctgggaattg
     3421 tatctaccag gccaattgcc tgtttagctc tgtggtctct acctcctagc aatgcttctg
     3481 tctagcaaga actaaaggca ataggaaaag atctccaaaa aaaaagaaaa agtgtaaaag
     3541 agagggggag ggaacaaaaa acacaaaaac actagaacag gataacgtct aaggaacagg
     3601 gtcagtgcat tctgttatgt aagactctta ctgcagaaaa tctaaatttg ccatataatt
     3661 aagattcttg ctcaatcaat gtattaaagt tccccaggga aacaagccca ataggacaca
     3721 tagaaacaaa agagagtggg ctgaagagat ggctcagggg ttaagagcat tagctgctct
     3781 tccagtggtc atgagttcaa ttcctagcaa ccacatggtg gctcacaacc atctgtaatg
     3841 gaatctgatg ccctcttctg gtgtgtctga agagagcaac agtatactca catacataaa
     3901 ataaataaat aaatggtaag ttctgagaga cagagagaca gagaggagag gaagttagtt
     3961 taccaggggc tggagcatgg ctcagtgacc aatggcatga agtttttttc ccagcactca
     4021 tgttgggcag cccacaactg cctgcaaatg ccagcactaa ggggtcagat atctctggct
     4081 ttagcatgca cctgtattca cataactaaa aattacacac ttaaaataat aacaatttgc
     4141 catatggatt gggtcacact attacaagga ctgggagaaa acatagcatg ctgtctttaa
     4201 cctggagact caggacagca gcgtaatcca gaccagactt aaaggctaac ttgtcagtgg
     4261 tgcatagtca gttcaaggaa ttcagagcca agagactgga cagggactcc tgtgcaagtc
     4321 ccggagtctg ggaaccataa actatgacat tccaagatgg gtcagctcaa ggaaagaaca
     4381 aactggcctt tcccacattt ttgaggcggc cccttgatgg attggttagg acctgctaac
     4441 attgacaagg ataagtcttc atttactgac tcagtgtcca atcttttcta gaaataccct
     4501 cagacaaccc ccctgaaaaa aagtaaaatt aaaaaagaaa aggtttcact agctatctgt
     4561 tacaccctgt cgcctcagaa gctgagagca aaggctgcat acagcctagt gtgcctcttc
     4621 accccttccc attgttgttt acaggcccag caggttgttt ttttcttgag acaggggctc
     4681 tacataaccc aggctgtact ggtctactgt gtagaccagg ttagctttga actgatagag
     4741 ctcctctgcc ttctggatgc tgagattaat ggagtgtacc accatgctgg cccaagaata
     4801 aataaatgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtagagt tagaaataca
     4861 aacaactgac aactatggtt gacttcaaaa ggaaaatttt attgttattt cctattagct
     4921 ctatagagaa tggaaatgta aaaatatttc aaatgataat gttatagcag tcaggcagca
     4981 tggtgcctgt aactgtgcct cctgacaaat cccactgcac actaccttgt ccaactagac
     5041 cctctccaca gtgagtaggt tcatcttcat tggtttatct ttttgatata tgatagttat
     5101 cagagtatta ccagaaaatg tgctagagac ttctaataaa gtgtgattcc cccaccatga
     5161 ttcctgctcc ccccaaaaaa acacccttcc agatgcacac cacaagtgtg gttatcacaa
     5221 agcaactccc agcactatca gttctgatgt ctattgggta cagtgctaaa tgtctgcaac
     5281 catcacctac ataaattgta taaaggaaac tatttatttt tacttcacca ttttgagggt
     5341 taagtccatg attggttggt ccatttgttt ttctacctac ctcagggaaa tgcatccaga
     5401 cagcacagct gcttatttta tggtggtaag ccagcaagaa gaaaagttga gggaatggga
     5461 tgccagtccc ctctgtgaac ctacccctta atgaccacag tgtgtcccac taggccccaa
     5521 ctcagtattt ctactacccc c
//
