LOCUS       XM_036161635            3032 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus vesicle transport through interaction with
            t-SNAREs 1A (Vti1a), transcript variant X12, mRNA.
ACCESSION   XM_036161635
VERSION     XM_036161635.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000085.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="19"
     gene            1..3032
                     /gene="Vti1a"
                     /gene_synonym="1110014F16Rik; 1110018K19Rik;
                     4921537J05Rik; MVti1; MVti1a; Vti1; Vti1-rp2"
                     /note="vesicle transport through interaction with t-SNAREs
                     1A; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 3 ESTs, 232 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 43 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:53611"
                     /db_xref="MGI:MGI:1855699"
     CDS             387..890
                     /gene="Vti1a"
                     /gene_synonym="1110014F16Rik; 1110018K19Rik;
                     4921537J05Rik; MVti1; MVti1a; Vti1; Vti1-rp2"
                     /codon_start=1
                     /product="vesicle transport through interaction with
                     t-SNAREs homolog 1A isoform X12"
                     /protein_id="XP_036017528.1"
                     /db_xref="GeneID:53611"
                     /db_xref="MGI:MGI:1855699"
                     /translation="MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQ
                     LEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNE
                     LLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETASPLNWRDLKPYCYINFS
                     RFLLKIQ"
ORIGIN      
        1 ggaaagcccg cgcctgcaac ttagagtttg ggggcgctcc agccgtttct ctggagctgc
       61 agtgtggggg acgtgtattc tgtgataccc gagagcatgt gggctttcgt agtctttttt
      121 tttttttagg ggtcaccgaa agtgaacttt ttctttagtt ttacgttcga agatttgggt
      181 ggaaaggaaa aggcgcaggc agcgcagttt ccggaggaca aggactgcgt agagcaacca
      241 ggaagcggca gggctgggag ttgttcccgg ttcccgctgt gctgtggaga cttcttcaca
      301 gggtccctgc gccgaggccg ggcgcccttg gcgagtcccg ctctgagcgc tagaacccgg
      361 ctccggccgg ccgtgcccga gctgccatgt cttccgactt cgaagggtac gagcaggact
      421 tcgcagtgct cactgctgag atcaccagca agattgcaag ggtccctcgg ctccctcccg
      481 atgagaagaa gcaaatggtt gccaatgtgg agaaacagct tgaagaggcc agagaactgc
      541 ttgaacagat ggatttggaa gttcgagaaa ttccacccca aagtcgagga atgtatagca
      601 acaggatgag aagctacaag caagaaatgg ggaaactgga aacggatttt aaaaggtcac
      661 ggatcgccta cagtgacgaa gtacggaatg agctcctagg ggatgctggg aattcctccg
      721 agaaccagag ggcacatctg ctggataaca cggagaggct ggaaaggtcg tctcggagac
      781 tagaggctgg gtaccagata gcagtggaga ctgcatctcc cctcaactgg agagacctga
      841 agccatattg ctacatcaac ttttccagat tccttctgaa gattcagtga tatctgggag
      901 agcagtcacc ccaaatctct ccagcaagct ttcagtgacg tcattacacc cataaacaag
      961 tcacttcgct ctggaatctc acgtgtgaaa ggacagcgag gtttagcctt attatcacaa
     1021 actagcacta gtttattcct gacatttttt ttagaggcct aagccttggc atttaagtga
     1081 aatatttgca ggaagaaaaa ggaaatgcta agcccaggaa gacagaagtt acagctaatg
     1141 cctcacacag atacagaatt cagacgaatg caagaagaca ttggtagaca agagtgctta
     1201 ctctccagga ggtgcgacga actggtctca tgcctattaa actcaacact ggtgcagtga
     1261 gggaagccgt ggaaagtgta cttctctagg caccccagta ttgcctcttc aagaccctgc
     1321 agtgtggcca ggtctgtggg cgacatggac agaaatgtta aagaaattga ctgttcttgc
     1381 tctaggcaga ggcctccaca tcatgagcct ccttgagaag aatttcccgg ccccaaacca
     1441 agcaaaggtc agagcccagc acaggtcaga gcccagcaca ggtcagagcc cagcacaggt
     1501 cagagccctt gacttggaga atctctttga cgccatccag tctgcctcct tcttattaca
     1561 ttttaaaaga gaatagattt caattttata gcataaaatt caagtaattt gaaccaaaag
     1621 aaaaaataaa tttgtcccct tttgctgctt ttgatagctt accactgagc acatatgaaa
     1681 aatgcctact tcagagcttc tcttcctcta ggttttaaga tggatctgga ctacatggat
     1741 tgttcaatat gaaatgaaaa tgtcagttgt cacactggtt tttggtattt tcctaatagg
     1801 gcttattctg ccctcctcct aactctctcc aggctgcctg tcataaaaac gagctgtttg
     1861 gatcctgggg ttggtaatgg gagctgtttc agcaaggtgc tggtaagccc cttattccag
     1921 cttggtgtca gctgacccac aaggaggcca cacctaggtg ggcatgggca agtgcagcta
     1981 ctagcccttg tctcctcagc cccatcttta agggattgcg tgtggtgatg ggctgctcac
     2041 ttgaccaaca tggaaatttc cataaagagc cctggaaatt tcaacaacct gcctggtcat
     2101 ttgtatgaaa tccatttgtg tataattttt cctgatgtgt attgtaaaaa gtgagggtga
     2161 aattcagggg aactgttttt aagtcattga gaaacagtcc tattatttca ttaggaaata
     2221 actgggctgg agaaaggcct ccatcagtaa gagcacccac tgcacaagaa tgatgaccaa
     2281 gtccagatct cagcacccat caaaggagct gggtgtgcgt gggcgcctgc ctataagccc
     2341 agcaccatgt gggcaaagac agagaaccac tagagctatc aaagtgtgag gtcagagtat
     2401 gaggtggagt cataggacag ggttgcacat gggttcctca gagatgcacg tctgcacaca
     2461 ggtgtgcatg taacaccaca aacacatttt agttttgatt tcagtatcct gagttgttct
     2521 ataaaaccca aatctagaaa gaaataaagg atcgtgatgg atatccatct gtgagagagc
     2581 atgctcttag ggaagtataa ctgttgagag tggcctgctt ttgtgaacaa gcctcccgtg
     2641 tttatcaggt acttctaaaa acaacaacaa caacagcaac aacaagaagc cacccttttc
     2701 tccaggatga aagcagaagc gtttcagtct caatgtgatc aagcttgtgg ctgcttccat
     2761 actgtaatgc catgggcctg aagtcagcag aggaattatc cttgaagcgt cttgggggag
     2821 tgcagatggt gtggctggga tgggcagtta ctggggaggc tgcacagtgg ctctgcacag
     2881 tggctctgcg cggtgggtct gcctcaggct gcccttagca catcaagttg gccttgccta
     2941 ggttttatcc tgggtgacgt ctttctctct tccactagtt tcactaaaac cattcacttc
     3001 tgaaataaac ctttattggc taaacgttta aa
//
