LOCUS       NM_001418632            2335 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus V-set and transmembrane domain containing 2B (Vstm2b),
            transcript variant 3, mRNA.
ACCESSION   NM_001418632 XM_006541031
VERSION     NM_001418632.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Martynova,E., Zhao,Y., Xie,Q., Zheng,D. and Cvekl,A.
  TITLE     Transcriptomic analysis and novel insights into lens fibre cell
            differentiation regulated by Gata3
  JOURNAL   Open Biol 9 (12), 190220 (2019)
   PUBMED   31847788
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2335)
  AUTHORS   Inoue,S., Sano,H. and Ohta,M.
  TITLE     Growth suppression of Escherichia coli by induction of expression
            of mammalian genes with transmembrane or ATPase domains
  JOURNAL   Biochem Biophys Res Commun 268 (2), 553-561 (2000)
   PUBMED   10679242
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC136717.10.
            
            On Mar 22, 2023 this sequence version replaced XM_006541031.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4649575.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-240               AC136717.10        39726-39965         c
            241-856             AC136717.10        38706-39321         c
            857-1041            AC136717.10        37967-38151         c
            1042-1161           AC136717.10        37260-37379         c
            1162-1191           AC136717.10        36876-36905         c
            1192-1663           AC136717.10        35254-35725         c
            1664-2335           AC136717.10        8111-8782           c
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 27.88 cM"
     gene            1..2335
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="V-set and transmembrane domain containing 2B"
                     /db_xref="GeneID:58188"
                     /db_xref="MGI:MGI:1914525"
     exon            1..240
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            241..856
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             775..1752
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="isoform 3 precursor is encoded by transcript
                     variant 3; V-set and transmembrane domain-containing
                     protein 2B"
                     /codon_start=1
                     /product="V-set and transmembrane domain-containing
                     protein 2B isoform 3 precursor"
                     /protein_id="NP_001405561.1"
                     /db_xref="GeneID:58188"
                     /db_xref="MGI:MGI:1914525"
                     /translation="MEQRNRLGALGYLLPLLLHSLLLFVADATFTEVPKDVTVREGDD
                     IEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKTVKAFMMLDLPSS
                     VRFQVENLEEMMRSPWLSSIPTLPSRQVTNKDATKISTVRVQGNDISHRLRLSAVRLQ
                     DEGVYECRVSDYSDDDTQEHKAQALLRVLSRFAPPNMQAAEAVSHIQSSGPRRHGASS
                     AVSSNNAGAAVRTTSETSHDDKNPPPGSPPAGSGVPEAAAAAASATHTATTTAAAAAA
                     SSSASPPSGQAVLLRQRHGSGTGPGYSADPLLSLLLLALHKFLHPLLGH"
     exon            857..1041
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1161
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..1191
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1663
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..2335
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2195..2200
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      2214
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="major polyA site"
     regulatory      2241..2246
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2263
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="major polyA site"
     regulatory      2310..2315
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2322
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
                     /note="major polyA site"
     polyA_site      2335
                     /gene="Vstm2b"
                     /gene_synonym="2900093B09Rik"
ORIGIN      
        1 gtcactcacg gccactgcct gctggctccc tggtgcgctc cgcgccacag gcacctgctc
       61 gcccggcgct ggacgctcag ttcttgttcc cacactgcgg actcctagtc ttcactgtca
      121 cttggtcttg ctgctggccg gacatagcac tcctcccttc ttgcattccc ctggagccca
      181 cccacccgcc atggcccggg tctgggccaa agagtggcgt ggctcgtggt ccaaacctgg
      241 gtctgcacgc cgcggctgag cgcccactcg ccttgaagag tgagcggtgg agaaaccagc
      301 gggggcggcg gcgggagagc tccccgggag tcggaggagg tggcagtcgg gagcccagcc
      361 agaaggagac caggaggcag acgttggtgc cttacaggca ctcactccct tctccaagga
      421 tggatcctgg cgcagtccgg cagtttcctg gcccgcccgc cagagtctga actgcggatc
      481 cctattctcc tgtggagcac cggactgaag gaggtacaga ccgaaggatc ctcctggagg
      541 gacctcgtct cctgcgtccc ccgcgtagcg ccccccgccg gagccgcgcc gggccagccg
      601 gcaaggaagc tgggctgatt ggcggccgcc ggcggccagg ggagggggcg ccgtgcgggg
      661 ccatggcagg ctccgaggcg tcctagccgg agctcgagcc ggagccgagc ccaagctgcc
      721 gccgccgccg cctctccgcg ccgggccccc gccgccgccg caaccctgcg ggagatggaa
      781 cagcggaacc ggctcggcgc cctcggatac ctgctacctc tgctactgca cagcctgctg
      841 ctcttcgtgg ccgacgctac attcaccgaa gtccccaaag atgtaaccgt gcgagagggt
      901 gacgatatcg aaatgccctg cgcgttccgg gccagcggag ccacctctta ctcgctggag
      961 attcagtggt ggtacctcaa ggagcctccc cgggagctgt tacacgagct ggcgctcagc
     1021 gtgccgggcg cccggagcaa gactgtcaag gccttcatga tgttggacct tccatccagt
     1081 gttcggttcc aagtggagaa tttagaggaa atgatgaggt ccccttggct gtccagcatc
     1141 cccactctcc caagcagaca ggtaacaaat aaggatgcaa ctaaaatcag caccgtgcga
     1201 gtccagggca atgacatctc acaccggctt cggctgtccg ccgtacgatt gcaggacgaa
     1261 ggtgtttatg aatgtcgcgt ttcggactac agcgatgatg acactcagga gcacaaggcc
     1321 caggcattgc tgcgtgtgct atcgcgcttc gcgccgccca acatgcaagc tgcagaggca
     1381 gtgtcccaca ttcagagcag cggcccgcgt cgccacggag cctccagtgc tgtcagctcc
     1441 aacaacgcag gcgctgctgt ccgcaccacc tctgaaacca gccacgatga caagaaccca
     1501 cctcctggga gccctcccgc tggatcagga gttcctgagg ccgccgctgc cgctgcctcc
     1561 gcgacccaca cagccaccac aactgctgct gcagctgctg cttcttcatc agcatcacca
     1621 ccatcagggc aggctgtcct tctgcgccag aggcacggct ccggtaccgg cccaggctac
     1681 agtgccgatc ctctgctgtc tctgctcttg ttagcactac ataagttcct gcacccactt
     1741 ctgggccact gacagccgtc aaacctcagc aggcaccctg ggaggacacc ttgccacatg
     1801 gacacaggga ctgagggaag catgaagaag tccatgcaaa aataaataaa tcatattttt
     1861 ggggaagtaa cacagatcta gaagacttaa aataatgcat caattttcca aataggatgg
     1921 ggtgcaggcc gtgcggtgtg catggggcgc caagttcttc acggcaatgt atttttcttt
     1981 cctccacatt ccctctgaat cttcattttg cacgaactct tgagcaagtc ccttgaggat
     2041 agtatgtaaa aaatgttggg tcaaagcctt tctgacaaag taaaatattt ttaggagatt
     2101 attgtgttta gaaaattttt ctttgaattt acattttctt tgggggattt ttcttttttt
     2161 attaaattat ttctttggag acattttgat taaaaagaaa catcataatt aaaattcact
     2221 gtcaataata tttattttta aataaaaatt ggaaacaagg atatacagtt gtttataaac
     2281 tgtattgtat attgctgaac aatagttgta ttaaaaagaa aaccttttaa ataga
//
