LOCUS       NM_020518               1170 bp    mRNA    linear   ROD 31-MAY-2024
DEFINITION  Mus musculus V-set and immunoglobulin domain containing 2 (Vsig2),
            mRNA.
ACCESSION   NM_020518
VERSION     NM_020518.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1170)
  AUTHORS   Chretien,I., Marcuz,A., Courtet,M., Katevuo,K., Vainio,O.,
            Heath,J.K., White,S.J. and Du Pasquier,L.
  TITLE     CTX, a Xenopus thymocyte receptor, defines a molecular family
            conserved throughout vertebrates
  JOURNAL   Eur J Immunol 28 (12), 4094-4104 (1998)
   PUBMED   9862345
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB869209.1, AK008920.1, AC105958.11 and AV018710.1.
            
            On Sep 7, 2006 this sequence version replaced NM_020518.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK008920.1, SRR5189676.20341.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                BB869209.1         2-53
            53-1032             AK008920.1         15-994
            1033-1118           AC105958.11        158729-158814
            1119-1170           AV018710.1         190-241
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 20.78 cM"
     gene            1..1170
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /note="V-set and immunoglobulin domain containing 2"
                     /db_xref="GeneID:57276"
                     /db_xref="MGI:MGI:1928009"
     exon            1..184
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     CDS             121..1107
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /note="CTM; V-set and immunoglobulin domain-containing
                     protein 2; CT-like protein; cortical thymocyte-like
                     protein; cortical thymocyte receptor (X. laevis CTX) like"
                     /codon_start=1
                     /product="V-set and immunoglobulin domain-containing
                     protein 2 precursor"
                     /protein_id="NP_065264.2"
                     /db_xref="CCDS:CCDS22980.1"
                     /db_xref="GeneID:57276"
                     /db_xref="MGI:MGI:1928009"
                     /translation="MAWPLVGAFLCGHLLGFVCLSGLAVEVTVPTEPLSVPKGKTAEL
                     SCSYKTSVGDNFALEWSFVQPGKPISASVPVLYFTNGHLYPTGSKADRAILLHDPPTG
                     GLATLKLTDLRPSDTGTYLCNVNNPPDFYTNGLGLINLTVLVPPSHPLCSQSGQTSVG
                     GSAALGCRSSEGAPKPVYNWERLGSSPTPPPGSMVQDEVSGQLILTNLSLTSSGTYRC
                     VASNQMGSASCELNLSVTDSSEGRVAGTLIGVLLGVLLLSVAAFCLIRFQKERKKEPK
                     ETYGGSDLREDATAPGVFEQASMRADHSKELLEKSPCASTMTTTKSKLSMVV"
     exon            185..342
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     exon            343..550
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     exon            551..709
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     exon            710..829
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     exon            830..974
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1170
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1146..1151
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /note="hexamer: ATTAAA"
     polyA_site      1166
                     /gene="Vsig2"
                     /gene_synonym="1190004B15Rik; 2210413P10Rik; Ctm; CTX"
                     /note="major polyA site"
ORIGIN      
        1 gtttgctttg agatagccag tctttctcca gcccaacaca aggcggctgc ccttcgggct
       61 ttcctagacc cttacatcct tcagaccgat agagaacagg acccggagac agcagtggct
      121 atggcctggc ccctggtggg ggctttcctt tgcgggcact tgctgggctt cgtgtgcctg
      181 agcgggctag ctgtggaggt gactgtgccc actgagccac tgagcgtgcc aaagggtaag
      241 acggccgagc tgagctgcag ttacaaaaca tcggtgggcg acaactttgc cttggagtgg
      301 agctttgtgc agcctgggaa gcccatctct gcgtccgtgc ccgttctgta cttcaccaat
      361 ggccacctgt atcccactgg ctctaaagca gatcgggcca tccttctcca cgatccaccc
      421 acaggaggac tggctaccct gaaactgact gacctccgcc cttcagacac tgggacctac
      481 ctctgcaatg ttaacaaccc accagatttc tacaccaacg ggttggggtt aatcaacctt
      541 actgtgctgg tgccccccag tcacccctta tgcagccaga gtgggcaaac ctctgtggga
      601 ggttctgctg cactgggatg ccgctcctct gagggagcac ccaagccagt gtacaactgg
      661 gaacgtctcg gatcttctcc tacacctcct cctggtagca tggttcaaga tgaagtgtcc
      721 ggccagctca ttcttaccaa tctctccctg acctcctctg gcacctaccg atgtgtggcc
      781 agcaaccaga tgggcagtgc ctcctgtgag ctgaacctct ccgtgactga ctcatctgaa
      841 ggccgagtag ctgggactct tattggggtg ctgctgggag tgctgctcct gtcagtcgcc
      901 gcattctgcc tcatcaggtt ccagaaagag aggaaaaagg agcccaagga gacctatggg
      961 ggtagtgacc ttcgggagga tgcaaccgct cctggggttt ttgagcaagc ttctatgaga
     1021 gccgatcata gcaaagagct cctggagaag tctccatgtg ccagcaccat gaccaccact
     1081 aagtccaaac tctctatggt tgtctgactt ctgatcgctg agggtggtga gcgtccatgt
     1141 taataattaa agcctaaacc atgccacctc
//
