LOCUS       NM_001368881            3831 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus V-set and immunoglobulin domain containing 10 like
            (Vsig10l), transcript variant 1, mRNA.
ACCESSION   NM_001368881 XM_355890
VERSION     NM_001368881.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154108.3.
            
            On Mar 8, 2019 this sequence version replaced XM_355890.10.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1603428.1,
                                           SRR10662774.2648661.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               AC154108.3         181630-181751       c
            123-938             AC154108.3         180727-181542       c
            939-1232            AC154108.3         179803-180096       c
            1233-1517           AC154108.3         179397-179681       c
            1518-1772           AC154108.3         178282-178536       c
            1773-2051           AC154108.3         177197-177475       c
            2052-2348           AC154108.3         176652-176948       c
            2349-2462           AC154108.3         176133-176246       c
            2463-2617           AC154108.3         175788-175942       c
            2618-3831           AC154108.3         172888-174101       c
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 28.25 cM"
     gene            1..3831
                     /gene="Vsig10l"
                     /note="V-set and immunoglobulin domain containing 10 like"
                     /db_xref="GeneID:75690"
                     /db_xref="MGI:MGI:1922940"
     exon            1..122
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..2689
                     /gene="Vsig10l"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; V-set and immunoglobulin domain-containing
                     protein 10-like; ZV-set and immunoglobulin domain
                     containing 10 like"
                     /codon_start=1
                     /product="V-set and immunoglobulin domain-containing
                     protein 10-like isoform 1 precursor"
                     /protein_id="NP_001355810.1"
                     /db_xref="CCDS:CCDS90217.1"
                     /db_xref="GeneID:75690"
                     /db_xref="MGI:MGI:1922940"
                     /translation="MGLSWALLPFLLLAFRAELLALQPALGSQPPSASSSHSMGSSRD
                     FVSNVSSSQHPQPPGSEASAGIPDSNRFPQGLNSSHVPGLFRTNVSAEEQYLSPDVTS
                     SETPPSRVSLDGLDSQDPDKDSGLPFLVKTPASQISVQTPDTKVPTKASGSKLSLEHH
                     NLEPGSKISSEIYQAASFPQQVGGPLAVLVGTTIRLPLTPVPSSSPPAPLVVWRRGSK
                     VLAAGGLGSQAPLISLDPMHQARLRFDQIRGGLELTSARLDDAGVYTVEVIRGGVSQQ
                     IREFVVGVFEPLPQLSVQPRAPETEEGAAELRLSCVGWNPGSGKLSWSRDGRALGTSD
                     PEGAEPPRIRTERDQLLISRPVRSDHARYTCQVRSPFGHTEAAADVSVFYGPDAPVIR
                     VSSDRDASPALYVTAGSNVTLHCSAPSRPPADIAWSLADPTEAAVPAGPRLLLPAVGP
                     GHGGAYACIAANPRTGHRRRSVFNLTVADLPPGAPQCSVEGGPVDRSLRFRCSWPGGV
                     PAASLQFQGLPEGVRAGPVPSTLLVTVPARPELSGVAVTCLARHLVATRTCTIIPEAP
                     QEVLLQPIVEETQPGDVVVALEVTGCPPPSRASWARQGRPLAPGGGGRLQLSQDGRKL
                     LINNFSLDWDLGNYSVLCSSALGAGGNQITLTGPSISSWRLQRAQEAAVLTWDVERGT
                     LLTGFHIQAWTDSSEVDRVTMSRDWVSLLILGPQERSAIVPLPPRNPGTWAFRILPIL
                     GSLPGTPSQSRVYQAGSDLSPGAIAGIVLGSLLGLALLAGLLILCICCLRRYPGRASV
                     KKQHSLTLAPVLTPPAKKIQSLTPVQTPRPLPIKTKMQSPHPAKAQQVISPSPTLCPG
                     GSPWTVRAATQV"
     exon            123..938
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            939..1232
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1517
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1772
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            1773..2051
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            2052..2348
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            2349..2462
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            2463..2617
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
     exon            2618..3831
                     /gene="Vsig10l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcctgctg gacttgtcag acctgggaca atgcaagctg tggatctctg tgtagtgtcc
       61 tctctggagt gtgaccatca ccatgggcct ctcgtgggct ctgctgccct tcctactcct
      121 ggccttcaga gctgagctcc ttgccctcca gccagctttg ggctctcagc caccctctgc
      181 ctcctcctca cactccatgg gctcctctcg ggactttgtt tcaaacgtct cctccagcca
      241 gcacccccag ccgccaggtt cagaagcctc tgctggaatc cctgattcca accggtttcc
      301 tcaggggctg aattcaagcc atgtgcctgg attattcagg accaatgttt ccgctgagga
      361 acagtatctc agccctgatg tcacctcctc tgaaacccct ccttccagag tgtctcttga
      421 tggtttagat tctcaagatc ctgacaaaga ctctgggctt cccttcctcg tcaagactcc
      481 agcttcacaa atatcagttc aaactccaga caccaaagta cctaccaagg cctcaggttc
      541 aaagctatcc ctggagcatc acaaccttga acctggatcc aaaatttctt cagagattta
      601 ccaagctgca agctttcctc agcaagtggg gggacccctg gctgtgctag tgggaaccac
      661 catcaggctc cccttgaccc cggtccccag ctccagtccc cctgctcctc tggtggtctg
      721 gcgccggggt tccaaggtat tggcagctgg gggtctgggg tcacaggctc cactaattag
      781 tctggacccc atgcatcaag cccgcctgag atttgaccag attcgagggg gtctggaact
      841 cacctctgcc cggctggatg atgcaggggt gtacacagtt gaggtcatca ggggaggagt
      901 ctcccagcag attcgagagt ttgtggtggg tgtatttgag cccttgcccc agttgtcagt
      961 acagcccagg gcgccagaga cagaagaagg agcagccgag ctgcggctaa gctgcgtggg
     1021 gtggaaccca ggtagcggga agctgagctg gagtagagac ggacgagccc tgggcacctc
     1081 agaccctgaa ggcgcagagc cacctcgcat ccgcacagaa cgggaccagc tgctcatctc
     1141 acgtccggta cgcagcgacc acgcccggta cacttgccag gtccgaagcc cctttggcca
     1201 caccgaagct gcagctgacg tcagtgtttt ctacggcccg gacgctcctg tcattagggt
     1261 ctcctcggac cgggatgcca gtcctgcgct ctacgtcact gcgggcagca atgtgacctt
     1321 gcattgctcg gccccctcgc ggccgcccgc ggacatcgcg tggagtctgg cagaccccac
     1381 agaggccgca gtgcctgcgg ggcctcgcct cctgctgccc gctgtggggc caggccatgg
     1441 cggcgcttac gcctgcatcg ccgcgaaccc tcgcactggc caccgccggc gttcagtgtt
     1501 caacctcact gtggcggatc tgccccccgg agccccacaa tgctcagttg aaggaggtcc
     1561 tgtggaccgc agcctccgct ttcgctgctc ctggcctggc ggggtccctg ccgcctccct
     1621 gcagttccag ggtcttcccg aaggcgtccg agcgggaccg gtgccatcta cgctcctggt
     1681 gactgtcccc gcccgcccgg agctcagcgg cgtcgccgtc acctgcctgg cccgccacct
     1741 ggtggccaca cgtacatgca cgatcatccc ggaagccccc caggaagtgc tgctccagcc
     1801 catagtagag gagacacagc caggggatgt ggtggtggca ctggaggtca ccggctgtcc
     1861 cccaccctca agagcatcct gggctcggca aggacggccc ctggctccag gtggtggggg
     1921 ccgactacag cttagccagg atggccgaaa gctcctcatc aacaacttca gcctggattg
     1981 ggacctgggg aattattctg tgctgtgcag cagcgcactg ggtgctgggg gcaaccagat
     2041 caccctcaca gggccctcta tttcttcctg gaggctgcag agagcccagg aagctgcagt
     2101 gctcacctgg gatgtagagc gaggcactct cctcactggc tttcacatcc aggcatggac
     2161 agatagctct gaagtggaca gagtcaccat gagtagagac tgggtctccc tgctcattct
     2221 gggccctcag gagcgatcag ccatagtgcc actccctcct cggaaccctg ggacctgggc
     2281 ttttcgcatc ttgcccatct tggggtctct gccagggacc ccatcccaaa gccgagtcta
     2341 ccaggcaggc tctgacctga gtccaggggc catcgctggc atcgtccttg gctccctatt
     2401 gggcttggcg ctgctggctg gccttctcat cctatgtatc tgctgcctga ggcgttaccc
     2461 aggaagggct tctgtgaaga agcagcactc gctgaccttg gctcccgtgc tcaccccacc
     2521 agcaaaaaag atacagagtt tgaccccagt gcagacccca cggccccttc ccatcaaaac
     2581 caagatgcag agccctcacc cagccaaggc ccaacaagtc atcagcccca gtccaactct
     2641 ctgtccaggt ggcagcccat ggactgttcg ggcagccacc caggtgtgac aaaagccagt
     2701 ggcccactct ccatgaagtg ttcggagtac aacatcctgc tttggtccag cagcatggag
     2761 cttcgtatgc ctgaggactg gaccctaaga gtgaggcttc ctgtctccca cttgtctcag
     2821 aagacacaga ctgtcctttt gcatctgagg gcaccaatgt gactctggga ctaggagagc
     2881 cacctgcaga cggatgaatg tggttggcac aaactcagaa gcctcatgta gggctttcag
     2941 ctccaagctg gaaggggagc ctggccacag tgtctgcaaa ggttgctacc ttctcctgcc
     3001 ccaggccacg tcccctcagc ctccagagac tctcatccat catctaacac atcagtgtcc
     3061 catacccggc tccctcccca tctcttgatt tccttttttg ctgttttatt tgactcggaa
     3121 tcgcatgtag cccaggctag ctttagactc cctagatagc ccagactggc cctgaacccg
     3181 tgtctctcct gacccagtcc cacaagtgct ggaattcagg caagacccac ctcacccact
     3241 gctttctgtt tctttctttc ctcctgcttg tttgtttgtt tgtttgtttg tttgtttgtt
     3301 ttgggaaaag gatcccataa cacagacctt gctgtgttca ctgttacaga caattttcag
     3361 tctcctgcct cagcttcctg ggagctgaga tgacagccat gtacaccatg actactcact
     3421 gtcccctcta aatttttctg tgggctgtac atagtgtttc aacatccttc agtcggtgcg
     3481 ttttaaccct tgggcctgtg gtttggcctc tgtcaacccc tgtgacttct cttccataag
     3541 ccttctgcca accacacaca cataccctcc agctatttgt ccctagagtt tgctctgcct
     3601 ggacacttct ctttcccatg tcattgattt atcaaggctt gaagtagcca ttaccacatt
     3661 agacggactt ccccctctcc ccagcttcct ctcatcccat gagtgtgtaa cgatggatat
     3721 cgataacttt ccctctctga actgagagct cagtgaggcg cacaccacac atataccagc
     3781 agaaacatag cctggcatat agcaggcact caataaatac tcgtggactg a
//
