LOCUS       XM_030246004            4222 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus VPS54 GARP complex subunit (Vps54),
            transcript variant X2, mRNA.
ACCESSION   XM_030246004
VERSION     XM_030246004.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246004.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4222
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..4222
                     /gene="Vps54"
                     /gene_synonym="Hcc8; mSLP8; Vps54l; wr"
                     /note="VPS54 GARP complex subunit; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     mRNAs, 51 ESTs, 1336 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:245944"
                     /db_xref="MGI:MGI:2178798"
     CDS             59..2956
                     /gene="Vps54"
                     /gene_synonym="Hcc8; mSLP8; Vps54l; wr"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 54
                     isoform X2"
                     /protein_id="XP_030101864.1"
                     /db_xref="GeneID:245944"
                     /db_xref="MGI:MGI:2178798"
                     /translation="MASSHSSSPVPQGSSSDVFFKKEVDPTKHIRPVQSLPDVCPKEP
                     TVTDQHRWTVYHSKVNLPAALNDPTLAKRESDFFTKTWGLDFVDTEVIPSLYLPQISK
                     ENFIAYQQEISQREKIHERCKNICPPKDTFDRTLLHIHDKSRTDLEQVPKIFMKPDFA
                     LDDSLTFNSVLPWSHFNTAGGKGSRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEA
                     FFHAMTSQHELQDYLKKTTQAVKMLRDKIAQIDKVMCEGSLQILRLALTRNNCVKVYN
                     KLKLMATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCEL
                     EKLIDKMMIAEFSTYSHSDLNRPLEGECQVLEEERLVSLVFGLLKQRKLNFLEIYGEE
                     MIITAKNIIKERVINKVSQIEEIDTDVVVKLADQMRMLNFPQWIDLLKDIFSKFTVFL
                     QRVKATLNIIHSVVLSVLEKSQRTRELEEIPQQRSAGKDSSLDTDVAYLTHEGWFISD
                     AFSEGEPASAAVDTTSQRNTSPHSEPCSSDSVSEPECTTDSSSSKEQTSACAPPGGIE
                     IIVSEDMRLTDLELGKLASNIQELLCNASDVCHDRAVKFLMSRAKDGFLEKLNSTEFI
                     ALSRLMETFIVDTEQICGRKSTSLLGALQSQANKFVNRFHEERRTKLSLLLDNERWKQ
                     ADVPAEFQDLVDSIADGKIALPEKKPVVTEERKPADVLVVEGHQYAVVGTVLLLIRII
                     LEYCQCVDNIPSVTTDMLTRLTDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALS
                     SRCLQLIVHYIPVIRAHFEARLPPKQWSMLRHFDHITKDYHDHIAEISAKLVAIMDSL
                     FDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLK
                     KQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIWEQKR"
ORIGIN      
        1 gtgtgggata tggggctgct acagatcatc cacagcagtt gagtggtgat tttatgcaat
       61 ggcttcaagc cacagttctt ctccagtgcc tcaaggaagc agcagtgatg ttttctttaa
      121 aaaagaggta gatccaacaa aacacattcg acctgtgcag tcactgccag atgtgtgtcc
      181 caaggaaccc acagttacag atcaacatag atggactgtg tatcattcca aagtaaatct
      241 cccagcagca ttaaatgatc ctacactagc aaaaagagaa tctgacttct tcacaaaaac
      301 ttggggattg gactttgtgg acactgaagt cataccttca ctctacctcc cacagatcag
      361 caaggagaat tttatagcat atcagcagga gatctctcag agagagaaga ttcatgagag
      421 atgcaagaat atttgtcctc ctaaagatac ctttgacagg actcttttac atattcatga
      481 taaatccagg acagatctgg agcaagtacc taagattttt atgaaaccag attttgcctt
      541 ggatgattct ttaactttta attcagtttt accatggtct cattttaata ctgctggtgg
      601 gaaaggaagt cgcgacgcag cttcttccaa gttgcttcag gaaaagctga gccattatct
      661 ggatattgtg gaagtaaaca ttgctcacca gatctctcta cgttcagaag cattttttca
      721 tgcaatgacc tctcaacacg aattgcagga ctacctcaag aaaactaccc aggctgtaaa
      781 aatgcttcga gataaaattg cacagattga taaagttatg tgtgaaggat cactacagat
      841 tttaagactg gcacttacca gaaataattg tgttaaagta tacaataaac tgaagttaat
      901 ggccactgta caccaaactc agcctacagt gcaggtgttg ttatctactt ctgaatttgt
      961 tggagcgttg gacttaatag caacaactca agaggttctg cagcaggagc ttcagggcat
     1021 tcacagcttc cggcatttgg gatcacagct ttgtgaatta gaaaagctga ttgataaaat
     1081 gatgattgca gaattttcta cttattctca tagtgactta aatagaccac tggaaggtga
     1141 atgccaagtt ttagaagagg aaagattagt atctcttgta tttgggcttt tgaaacaaag
     1201 aaaacttaat tttttagaaa tctatggtga agaaatgatt attacagcaa agaacatcat
     1261 taaagagcgt gtgattaata aagtttcaca aatagaagaa atagacacag acgttgttgt
     1321 aaagcttgca gatcaaatga gaatgttgaa ttttccccag tggattgatc tgttaaagga
     1381 cattttctct aagtttacag ttttcctaca gagagttaag gcaacattga atattatcca
     1441 cagtgttgtt ctgtcagttc ttgagaaaag ccaaaggact agagaattgg aagagatccc
     1501 acagcagagg agcgctggga aggacagctc cttggacaca gacgtggctt acctgacaca
     1561 cgagggctgg ttcataagtg atgctttcag tgagggtgag ccagcatctg cggcggttga
     1621 tactacctct caaagaaaca cgtctccaca tagcgagccc tgcagcagtg attcggtatc
     1681 agaaccagaa tgtactactg attcttcatc cagcaaggag cagacatcag cgtgtgctcc
     1741 tccaggaggt atagagatta tagtcagtga agacatgagg ttaactgact tggagctagg
     1801 aaaactagca agtaacatcc aggagttact gtgtaatgct tcagatgtat gccatgatcg
     1861 agctgtcaaa tttctcatgt caagagcaaa ggacggtttt cttgaaaaat tgaattccac
     1921 ggaattcata gcactctcga gattaatgga gacattcata gtggacactg aacagatctg
     1981 tgggaggaag agcacgtcac tgcttggggc ccttcagagc caagcaaata agtttgtgaa
     2041 caggtttcat gaagagaggc ggaccaagct cagcctcctc ttagacaacg agcgttggaa
     2101 gcaggctgat gttcctgcag aatttcagga tcttgttgat tctatagcgg atggaaagat
     2161 tgctttacct gaaaaaaagc cagtggttac agaagaaagg aagccagctg atgttcttgt
     2221 tgttgaggga caccagtatg cagttgtcgg aaccgtcttg ctgttaataa gaatcattct
     2281 tgaatattgc cagtgtgtgg ataacatccc ctccgtcact actgacatgc tcactcgcct
     2341 gacagatctg ctgaagtact tcaattcaag aagttgccag ttagttcttg gagctggtgc
     2401 tttgcaagtt gttggactaa aaacaattac tacaaaaaac ttggccctct cttcacggtg
     2461 tctgcagttg attgtgcact acattcccgt gatccgggct cactttgaag cccgactgcc
     2521 ccccaagcaa tggagcatgc ttagacattt tgatcacatc acaaaggatt accatgatca
     2581 tatagctgaa atttcagcta agcttgtagc gataatggat agcctatttg ataagctgtt
     2641 atcaaagtat gaggtgaaag ctcctgttcc ttccccgtgt ttcaggaata tttgtaagca
     2701 aatgacaaaa atgcatgaag ctatatttga tcttcttccc gaagaacaaa cacagatgtt
     2761 atttttaaga attaatgcaa gttacaaact ccacttgaaa aaacagttat cacacttaaa
     2821 tgtaataaat gacggaggac ctcaaaatgg gttggtcaca gcagatgtag ctttttacac
     2881 tggaaatctt caagccttaa aaggccttaa agatctggat ctaaatatgg ccgagatctg
     2941 ggaacagaag aggtgatgac agactggaga cccaggtcgt tcatctgacc acgggatgtg
     3001 tttctgaaga aaatctggat gcctggtgtg ttaggaactg aacctgggac ccaaagtgac
     3061 tgaggtgggg gaagggaaaa gaaggatcag tgttgggaac tggattcagt gggatctaca
     3121 gagaaagcca ttctgtgcat ccctgagtaa ggagcaagtg atcaggtgtc tataacattt
     3181 ttcattctct ctggaaacag actcaggttt ctttggacca aatccaaaag aacacatagc
     3241 tgtaacacag ctgtagctgc ctagaatgct ctgtatactt tatattaaaa atgctctgca
     3301 tttcttccag tgcaatgaaa ttcatatggt gtcccacctt atttaatgat ggtacaattg
     3361 aaaatattaa aatcttagtc aacctctgta gaaagttttc tctatgaaag taaagctgtt
     3421 tgagaaatta tttttttaca gatctttata aaaaataaac atcttttgat tgcttggatt
     3481 taggaattca gtttttgttt taatgaccaa tgtcaagttt caggttttgt gtgctgcata
     3541 tttaactttt tcactaccac tgttatgtca ctgggtaaaa gcctcaaact gttaaatata
     3601 tgggagactg attataaaga ataaagaata tttgcattta cttatgcaac tactaattta
     3661 aatactttcc agaagtggga tacataaagc tatggtttaa tagctgtatt tattaaagta
     3721 cctatgaagg gtttggggta gcattctgtt ttttctttgc tttttcattt ctagcagagg
     3781 caagaataca tattcatata cgcttactta tgaattacca ttttaacatt tagataacat
     3841 gaaatatggc cctcttgaat tcttgctttt aagttccttt tgatatgtat ataagcaaag
     3901 accagggata aatggaattt ttaaaataca ggctgctgtg ttggggccag aaatacaagg
     3961 ttgatgagta agctatctga agacttttat aatgcctacc ttcaaaacca gaatcggcag
     4021 cactctacaa atgaaagtgc ctgtgtctca caccaagaat cttgcctaac ctgtcagagt
     4081 gcctaatctt gtggttataa tgtacaatga aataatcttg tgggggtttt ttgttttctc
     4141 aagaggaatt tttttttttt atcattgcag aggtatgtca ttggttctta aactgtcaaa
     4201 aataaagatg tacaaaaaca ga
//
