LOCUS       XM_030249706            3090 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus VPS52 GARP complex subunit (Vps52),
            transcript variant X1, mRNA.
ACCESSION   XM_030249706
VERSION     XM_030249706.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3090
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..3090
                     /gene="Vps52"
                     /gene_synonym="ARE1; D130068D18; D430041K17Rik; SAC2;
                     Sacm2l; tclw5"
                     /note="VPS52 GARP complex subunit; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 26
                     mRNAs, 37 ESTs, 583 long SRA reads, 1 Protein, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:224705"
                     /db_xref="MGI:MGI:1330304"
     CDS             889..2700
                     /gene="Vps52"
                     /gene_synonym="ARE1; D130068D18; D430041K17Rik; SAC2;
                     Sacm2l; tclw5"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 52
                     homolog isoform X1"
                     /protein_id="XP_030105566.1"
                     /db_xref="GeneID:224705"
                     /db_xref="MGI:MGI:1330304"
                     /translation="MEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLG
                     ELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEAMGTAACADVRGVL
                     DRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQAALLKYRFFYQFLLGNERATAKEIR
                     DEYVETLSKIYLSYYRSYVGRLMKVQYEEVAEKDDLMGVEDTAKKGFFSKPSLRSRNT
                     IFTLGTRGTVISPAELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFIC
                     EFFIVSGPAAHDLFHAVMGRTLSMTLKHLESYLADCYDAIAVFLCIHIVLRFRNIAAK
                     RDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDTRPHYVRASKITRR
                     YAEFSSALVSINQTIPNERTLQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDM
                     MLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEALIERGQA
                     ERLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYH
                     RFHRVLSQPQLRALPARAELINIHHLMVELKKHKPNF"
ORIGIN      
        1 gctgcggggg aatggcagcc gcagcgacca tggcggccgc tgcccgggag ctggtgttgc
       61 gggctggggc ctcagatgta gaggaggagg agggcccgct ggtgagagca cggggctgta
      121 ggtcctccgg agtatcgtca ggttgtccct ctcctcaggc gtaggctcca tttagacaag
      181 aggttcggag ccgtcttgcc acgggtgatg gtgacctagc cttcgtaggg accaaagtgg
      241 ctgaaaccca agccccaggg acagtgtcag cttcctgttc acgattttta gtagaaaaaa
      301 attttagtgt ttagcgtaaa aggttaagaa cgtggcctct ggaaccaatt tgcccggggt
      361 cccacctcca gccccaccgc ttgaaagcta tgctgtgttt tcggtgccaa aacttcccac
      421 acctttacag tgcaaacgct gttaggacat accttatagg tggtcgttag gattagccga
      481 atgagcatgt taaatggtgt accagacaca ggggtaaaca ctatgtaagc tggcgatttt
      541 agcctctgga attccctcag ggatcacctg gaatagctgg aaactgaggt cctaaattca
      601 aagggggggg gttctggact ccaagaaccc ctacaacttg gagagttgga catcacctct
      661 gatgaattca tcttggatga agtggatgtt cacatccagg caaacctgga ggatgagtta
      721 gtgaaggaag ctctcaaaac gggtgtggat cttcgacact attcaaagca ggtggagctg
      781 gagctgcagc agattgagca gaagtcaatc cgggactata tccaagagag tgaaaacata
      841 gcgtctctgc acaatcagat cacggcctgt gacgccgtcc tggagcgcat ggaacagatg
      901 ctgggagctt ttcagagcga tctcagctcc atcagctctg agatccgaac cctgcaggag
      961 cagtcggggg ccatgaacat ccgacttcgt aaccgacagg cagttcgggg gaaacttggg
     1021 gaacttgtgg atgggctggt ggtgccctct gctctggtca cagcaattct ggaagctcca
     1081 gtgaccgagc ccaggttcct ggagcagcta caggagctgg atgccaaggc agccgcggtg
     1141 agagagcagg aggctatggg caccgctgcc tgtgctgacg tcagaggcgt gctggaccgg
     1201 ctccgggtca aggcagtgac gaagatccgg gagtttattc tccagaagat ctactccttc
     1261 agaaagccca tgaccaacta ccagatcccc caggcggccc tgctgaagta caggtttttc
     1321 tatcagttcc tgctgggtaa tgagcgtgct acagccaagg agatcaggga tgagtacgta
     1381 gagacgctga gcaagatcta cctgtcctac taccgatcct atgtggggcg gctcatgaaa
     1441 gtgcagtacg aggaagttgc tgagaaagac gacctaatgg gtgttgaaga cacagcaaag
     1501 aaaggcttct tctcgaagcc gtccctccga agcaggaaca ccatctttac ccttggcact
     1561 cgtggtactg tcatctcacc ggccgagctg gaggccccca tcctagtgcc ccatactgcc
     1621 caacgtggag agcagaggta tccattcgaa gcgctcttcc gcagccagca ctatgccctc
     1681 ctcgacaatt cttgccgtga atatcttttc atctgtgaat ttttcatcgt gtctggcccg
     1741 gctgcacatg acctgttcca cgccgtcatg ggccgcacgc tctccatgac gctgaaacac
     1801 ctggagtcct acctggctga ctgctacgat gccattgctg tttttctctg tatccacatt
     1861 gttctccggt tccgcaacat tgcagcgaag agggacgtcc ctgccctgga caggtactgg
     1921 gagcaggtgc ttgccttgct gtggcctcgg tttgagctga tcctggagat gaatgtccag
     1981 agtgtccgca gcactgaccc ccagcgcctt gggggactgg acactcggcc ccactatgta
     2041 agggcgagca agatcacacg ccgctatgct gagttctcct ctgcacttgt cagcatcaac
     2101 cagacgatcc ccaatgaacg cacgctgcag ctcctgggac agctccaggt ggaggtggag
     2161 aattttgtcc tccgagtggc tgcagagttc tcctccagga aggagcagct tgtgtttctg
     2221 atcaacaact atgacatgat gctcggggtg ctgatggagc gggctgctga tgacagcaaa
     2281 gaggtggaaa gtttccagca gctgctcaat gctcggacac aggagttcat tgaggagctg
     2341 ctgtctcccc ccttcggggg tctggtggca ttcgtgaagg aggctgaagc cttgattgag
     2401 cgtgggcagg ctgagcggct ccgaggggag gaagcccgag tcactcagct gatccgtggc
     2461 tttggtagtt cctggaaggc atcagtggag tccctgagtc aggatgtaat gcgaagtttt
     2521 accaacttcc gaaatggaac cagcatcatc cagggggcgc tgacccagct gatccagctc
     2581 taccatcgct tccaccgggt gctgtctcag ccccagctcc gcgcactccc ggccagggcc
     2641 gagctcatca acatccatca cctcatggtg gagctgaaga aacacaagcc gaacttctga
     2701 ttcagacccc cctcccccgc ccctaagctc ctgtgtactc tgtgtgtcac acattttcac
     2761 ctgggacccc tttcccatcc cttttatctc tatggcttcc acactcccct ctcagcctcc
     2821 attgccagga ctctgcctca acagagtgcg ttcaaggcca ctccctgggt ttctgagtga
     2881 ggtgaccttc atttccagtc cggtcagctc ctctgctgtt cactcacagc ctgtgagctt
     2941 ccaccgcccc aggctctgac tgaccctcag ctcttagggc agagcactgc aggccaccct
     3001 gtagctgatc tgtgggctct gctggaacag tgacatcacc tcgtggtggg tctcactatg
     3061 tggcaataat aagtactaac agtgctggga
//
