LOCUS       NM_030742               2172 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus vomeronasal 1 receptor 63 (Vmn1r63), mRNA.
ACCESSION   NM_030742 XM_001472636
VERSION     NM_030742.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Young JM, Massa HF, Hsu L and Trask BJ.
  TITLE     Extreme variability among mammalian V1R gene families
  JOURNAL   Genome Res 20 (1), 10-18 (2010)
   PUBMED   19952141
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE and
            Harrow JL.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2172)
  AUTHORS   Rodriguez I, Del Punta K, Rothman A, Ishii T and Mombaerts P.
  TITLE     Multiple new and isolated families within the mouse superfamily of
            V1r vomeronasal receptors
  JOURNAL   Nat Neurosci 5 (2), 134-140 (2002)
   PUBMED   11802169
REFERENCE   4  (bases 1 to 2172)
  AUTHORS   Pantages E and Dulac C.
  TITLE     A novel family of candidate pheromone receptors in mammals
  JOURNAL   Neuron 28 (3), 835-845 (2000)
   PUBMED   11163270
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AF324866.1.
            
            On Dec 13, 2007 this sequence version replaced XM_001472636.1.
            
            Sequence Note: An upstream AUG was not annotated as the start
            codon. Though an uAUG has moderate Kozak signal strength, the
            annotated dAUG has a stronger Kozak signal and maintains an
            N-terminal aa sequence that is identical to many other mouse
            vomeronasal receptor proteins. For example, aa 1-23 of the
            annotated protein are identical to those of Vmn1r58, Vmn1r60, and
            Vnm1r61 whereas the uAUG encodes eleven additional aa that are not
            conserved at the N-terminus of any mouse vomeronasal receptor
            protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF324866.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on expression, longest
                                                protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 3.36 cM"
     gene            1..2172
                     /gene="Vmn1r63"
                     /gene_synonym="V1R1; V1rd1; V3R1"
                     /note="vomeronasal 1 receptor 63"
                     /db_xref="GeneID:81017"
                     /db_xref="MGI:MGI:3033470"
     exon            1..145
                     /gene="Vmn1r63"
                     /gene_synonym="V1R1; V1rd1; V3R1"
                     /inference="alignment:Splign:2.1.0"
     exon            146..2172
                     /gene="Vmn1r63"
                     /gene_synonym="V1R1; V1rd1; V3R1"
                     /inference="alignment:Splign:2.1.0"
     CDS             886..1788
                     /gene="Vmn1r63"
                     /gene_synonym="V1R1; V1rd1; V3R1"
                     /note="pheromone receptor V3R1; vomeronasal 1 receptor,
                     D1; vomernasal 1 receptor Vmn1r63"
                     /codon_start=1
                     /product="vomeronasal 1 receptor 63"
                     /protein_id="NP_109667.1"
                     /db_xref="CCDS:CCDS20765.1"
                     /db_xref="GeneID:81017"
                     /db_xref="MGI:MGI:3033470"
                     /translation="MEMLALQILLLCHVVVGTVGNILLFVHNFSQILTDSRLRPIQVI
                     LINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLST
                     YQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDS
                     KGNSICSISGVSVDMNFLRFSHDIIFLSIMAWTSVSMVIHLNRHHQRMNHIHKVNQNN
                     RGHAETRAAHTILMLVVTFVSSYTLNCISISFHISFVESCLWLRYVTKLLALSFPTIS
                     PLLLIFRDCKGHCSLRIMSVWKSI"
ORIGIN      
        1 gcacttcttt gagtctgtct taggaaatgg atacaaaaag atgttcttca aagggagagg
       61 aactcagagc tatatttctt cagtaactac tcaggagctg gcctacattt ctgtgagcaa
      121 caccatattt gctggtccta agcagtggtg ttttgccagc atgtatgact tggaaggtcc
      181 aaatgccttg gaattggaga taaatacagt tctaagtagc cattgcagtg ttagaaatag
      241 aatatggtaa tctggaagca ctcaactcct gagaaatctc cccaacactt gatcaaatat
      301 gtaaaagaca tacttatttt atgttatgcc tattactgtt ttgcttgtgt gcatgagtag
      361 aaatatatga ataaagtgcc acgaagctga gtagaggtca ttagatcgag aatcatctct
      421 ccaacaacaa atttgaattt cttaacacat tgttataaca tgagggatga tgtcagttct
      481 catgaggcaa aaatgcactc ctgtctacag acattcacgt atacatatgc agagcccatg
      541 ttgtgttaaa atgtgtgtca tcctgttgaa caagagatat acagttgcat tacacacaca
      601 aacacacaca cacacacaca cacacacact tacatcatga gtgaagggaa aggaaaataa
      661 gtctgaagtt gatattctgg atcaatgtcc aatcattgtt ttccagaaaa atctcctgta
      721 gtgtgtcaaa gcagtggtag cttctcaaaa aaaaaataat acaaatcaat tgaaaaacaa
      781 ttgaaaatct tagataattg agaagattct tgaggacagc actgtctaac ctgatcctta
      841 caccactgtg ctatgaagcc atctccaggt tgtctcctga aaaccatgga aatgttggct
      901 cttcagatcc ttttgctttg ccatgttgtg gttgggactg tgggcaacat ccttctgttt
      961 gtccataact tctctcaaat cttgactgac tccagactga ggccaataca ggtcattcta
     1021 atcaacttgg ctgtagccaa tgcattcatg ctccttctct ttgcatattc atatgatctt
     1081 actgatattg ttcccaggaa gcctccaact gacctcaaat gtaaacttgc atacttcttt
     1141 cacctggtgg ctcgaggcac aatcatgtgc tccacctgtg tcctcagtac ataccagttt
     1201 gtcactcttg ttcctggtac ctgggctagg gtcatgttca gcgaaatatc ccccaaggtt
     1261 gtaagctatt gttgttacag ctgctggttg ttcagtgtct taaataatgc ttacatgcta
     1321 atgaatgtca gtggtccaca gaaatcacac aatgactctg attctaaagg caattcaata
     1381 tgctccatct ctggggtcag tgtagacatg aatttcttgc ggttttccca tgacatcata
     1441 ttcctaagca tcatggcctg gaccagtgtc tccatggtga ttcacctaaa cagacaccac
     1501 cagagaatga accacataca taaggtcaat caaaacaaca gaggccatgc tgagaccaga
     1561 gcagcccaca ccatcctgat gctggtggtc acatttgtga gctcatatac tctaaattgt
     1621 attagtattt catttcacat ttcctttgtg gaatcttgtc tctggttgag gtatgtcaca
     1681 aaactcctgg ctctaagctt ccccaccatt tctcccttac tgttgatatt tagggattgt
     1741 aagggtcatt gttctctgcg catcatgtca gtatggaaat ctatttgaca gggggagcca
     1801 ttacagaggg acagtaaggt caaaacatgt ccaaaccctg aaaaaaatct catcctgata
     1861 ccagcagaag gactgatcct gccttgctct aggactgcat cttacaggta cacacagagc
     1921 cagtccatcc cccagctctg ccaccctgtg atagtcatgt aacctactgg ccaggatgca
     1981 gggtaaactt cctatctcct cataagaaca tgtccagcta gcaccaggaa ttcctaatca
     2041 tgcaaatgaa gcagtcccag aaactggacc actgccaatg atgtacactc atcccaaaaa
     2101 accctaacct catttcatgt gttgtataga caatgccacc cccaataaag atgtctgttt
     2161 catggaaaaa aa
//
