LOCUS       NM_053221               1098 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Mus musculus vomeronasal 1 receptor 42 (Vmn1r42), mRNA.
ACCESSION   NM_053221
VERSION     NM_053221.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Young,J.M., Massa,H.F., Hsu,L. and Trask,B.J.
  TITLE     Extreme variability among mammalian V1R gene families
  JOURNAL   Genome Res 20 (1), 10-18 (2010)
   PUBMED   19952141
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Amid,C., Rehaume,L.M., Brown,K.L., Gilbert,J.G., Dougan,G.,
            Hancock,R.E. and Harrow,J.L.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1098)
  AUTHORS   Hornberg,M., Gussing,F., Berghard,A. and Bohm,S.
  TITLE     Retinoic acid selectively inhibits death of basal vomeronasal
            neurons during late stage of neural circuit formation
  JOURNAL   J Neurochem 110 (4), 1263-1275 (2009)
   PUBMED   19519663
REFERENCE   4  (bases 1 to 1098)
  AUTHORS   Del Punta,K., Leinders-Zufall,T., Rodriguez,I., Jukam,D.,
            Wysocki,C.J., Ogawa,S., Zufall,F. and Mombaerts,P.
  TITLE     Deficient pheromone responses in mice lacking a cluster of
            vomeronasal receptor genes
  JOURNAL   Nature 419 (6902), 70-74 (2002)
   PUBMED   12214233
REFERENCE   5  (bases 1 to 1098)
  AUTHORS   Del Punta,K., Rothman,A., Rodriguez,I. and Mombaerts,P.
  TITLE     Sequence diversity and genomic organization of vomeronasal receptor
            genes in the mouse
  JOURNAL   Genome Res 10 (12), 1958-1967 (2000)
   PUBMED   11116090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC125372.1.
            
            On Jul 30, 2011 this sequence version replaced NM_053221.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC125372.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1098              BC125372.1         1-1098
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 40.02 cM"
     gene            1..1098
                     /gene="Vmn1r42"
                     /gene_synonym="V1ra1; V1ra3; V1ra6"
                     /note="vomeronasal 1 receptor 42"
                     /db_xref="GeneID:113848"
                     /db_xref="MGI:MGI:2148511"
     exon            1..1098
                     /gene="Vmn1r42"
                     /gene_synonym="V1ra1; V1ra3; V1ra6"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..1020
                     /gene="Vmn1r42"
                     /gene_synonym="V1ra1; V1ra3; V1ra6"
                     /note="vomeronasal type-1 receptor A6; vomeronasal
                     receptor V1RA10; vomeronasal receptor 1 A1; vomeronasal
                     receptor 1 A3; vomeronasal type-1 receptor A10; vomernasal
                     1 receptor Vmn1r42"
                     /codon_start=1
                     /product="vomeronasal type-1 receptor 42"
                     /protein_id="NP_444451.2"
                     /db_xref="CCDS:CCDS57439.1"
                     /db_xref="GeneID:113848"
                     /db_xref="MGI:MGI:2148511"
                     /translation="MGDILFSSPQSMFSHTMNKNSILHTHSIIGKTFFSEIGIGISGN
                     SFLLLVHILKFIRGHRPRLTDLPIGLLSLIHLLMLLVAAFIATDIFISRRGWDDIICK
                     FLVYLYRVLRGFSLCTTSMLSILQAIILSPRSSCLAKFKHISPHHISGAILFLSVLYM
                     LIGSQLLVSIIATPNLTMNDFIYVTQSCSILPLSYLMQSIYSTLLAIREFFLISLMVL
                     SNWYMVALLSMHRKQTQHLHGTNLSPKKSPEQSATQTILMLISFFLLMTIYDTIVSCS
                     RTMFLNDPTSYSIELFIMHIYATVSPFVFMSTEKHIVNFLRSLGKRVINFNLH"
ORIGIN      
        1 tgctgagggg agcagagttg cccaggaggg atgggtgata ttctgttctc ttctcctcag
       61 tcaatgttct cacatacaat gaataagaac agcatactac atactcattc tatcatagga
      121 aaaacatttt tctctgaaat tggcattggg atctcaggca acagcttcct tcttcttgtc
      181 cacatcctaa agttcattcg tgggcacagg cccagactca ctgacctgcc cattggtctc
      241 ttgtccctaa tccacctact gatgctactg gtcgcagcat tcatagccac agacattttt
      301 atctctcgga ggggctggga tgacatcata tgtaaattcc ttgtgtacct gtacagagtt
      361 ttgaggggtt tctccctttg caccaccagc atgttgagta tcctccaggc catcattctt
      421 agtcccagaa gctcctgttt agcaaagttc aagcatatat ctcctcatca catatcaggt
      481 gccattcttt tcctgagtgt cctctatatg ttaattggca gtcaactctt ggtatccatc
      541 attgccaccc ccaatttgac catgaatgac tttatttatg ttactcagtc ctgctctatt
      601 ctacccttga gttacctcat gcaaagcata tattctacac tgctagccat cagggaattc
      661 tttcttatta gtctcatggt cctctctaat tggtacatgg tagccctctt aagcatgcac
      721 aggaaacaga cacagcatct tcatggaacc aacctgtccc ccaaaaaatc cccagagcaa
      781 agtgccaccc agaccatcct gatgctcata agcttctttt tgctgatgac catctatgac
      841 accatagtct cctgctcaag aactatgttc ctgaatgatc caacatctta ctctatcgaa
      901 ctctttataa tgcacatcta tgccactgtc agcccttttg tgtttatgag cactgaaaaa
      961 catatagtta actttttgag atccttgggt aagagggtga taaattttaa tcttcattga
     1021 tgagaatata cttaagaaga gacattgttc tgccatcaga actgtcagtc atggcatgct
     1081 gtctatgtgc tttgccaa
//
