LOCUS       NM_178926               2091 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus vimentin-type intermediate filament associated
            coiled-coil protein (Vmac), transcript variant 1, mRNA.
ACCESSION   NM_178926 XM_974520
VERSION     NM_178926.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Yamamoto,Y., Irie,K., Kurihara,H., Sakai,T. and Takai,Y.
  TITLE     Vmac: a novel protein associated with vimentin-type intermediate
            filament in podocytes of rat kidney
  JOURNAL   Biochem Biophys Res Commun 315 (4), 1120-1125 (2004)
   PUBMED   14985129
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT010491.8.
            
            On Oct 19, 2022 this sequence version replaced NM_178926.3.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC026472.1, AK078549.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-209               CT010491.8         71388-71596         c
            210-2091            CT010491.8         68690-70571         c
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 29.47 cM"
     gene            1..2091
                     /gene="Vmac"
                     /note="vimentin-type intermediate filament associated
                     coiled-coil protein"
                     /db_xref="GeneID:106639"
                     /db_xref="MGI:MGI:2146912"
     exon            1..209
                     /gene="Vmac"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..543
                     /gene="Vmac"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="vimentin-type intermediate filament-associated
                     coiled-coil protein isoform 1"
                     /protein_id="NP_849257.1"
                     /db_xref="CCDS:CCDS28912.1"
                     /db_xref="GeneID:106639"
                     /db_xref="MGI:MGI:2146912"
                     /translation="MSAPPPLQIREANAHLAAVHRRAAELERRLLAAERTIGAQAERL
                     ACHDQHLRAALDELGRAKDREISALQEQLLSSEATVRSLQAAVDQRDQMIQQLQPRAD
                     LLQDITRHRPPLAALLATLEEAEELGPLPASHSHRAQLLPDGPGPPLGNNMGKEEGQD
                     DQDDQQPAVFGTTV"
     exon            210..2091
                     /gene="Vmac"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2071..2076
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vmac"
                     /note="hexamer: AATAAA"
     polyA_site      2091
                     /gene="Vmac"
                     /note="major polyA site"
ORIGIN      
        1 gcacggcagc cgggggccat gtctgcgccg ccacctctgc agatccggga ggcgaacgcg
       61 cacctggccg ccgtgcaccg acgcgcagcg gagctggaga ggcggctgct ggcggctgag
      121 cgcacgattg gtgcgcaggc cgagcgcctg gcctgccacg accagcacct gcgcgccgcc
      181 ctggatgagc tgggtcgcgc caaggaccgg gagatatctg ccctccaaga gcagctgctg
      241 agctctgagg ccacagttcg cagcctgcag gccgcagtgg accagaggga ccagatgatc
      301 cagcagctac agcctcgggc tgacctgctg caggacatca ctcgccaccg accacccctg
      361 gccgcactgt tggccaccct ggaggaggca gaggaactgg gccccttgcc ggccagccac
      421 agccataggg cccagctact tcctgatggg cctggcccac ccctgggcaa caacatggga
      481 aaggaggagg gccaggacga ccaggacgac cagcagcctg ctgtgtttgg gaccacggtg
      541 tgagctgtcc tgacagatct cagaatctgt ggtcacggcc ccatggggat tccactctta
      601 gagtcctgga catcacctag aggggtcttg agacattacc cggatcccat ctaaacatca
      661 caacaagtga aaactcaaga tctcatttaa accccccccc cccccccagt gctggagtat
      721 ctgctacatt ccactggttt taaatagttt caaaaacaaa tgaaggtaag ggtggtaact
      781 ctgggaggag cattctccac caggcataca caaagcccaa gccagacagg caccccagca
      841 tcagtgagat ggtggggact gaccctgaaa cctcggtgtt tcctgtttgg gacagggtcc
      901 caggtagcca ggcttgctgt ctcaggagtg tggcatggat ccctgctagg ctgacaggct
      961 cccactacag gccctgcctg tggggagttt gtctttttgc ttgagatggg gtctctctct
     1021 ataacccagg cttcccttga atcctccttc caagtacttg gaatctagat gtgagccacc
     1081 gtgccctgct gatgggagca ctccctacct ttctttctac tcactcttgt gcctcctgaa
     1141 ccatccttaa tgccaagaca aatcattaat cttggatctc tctcccatag ctctaccctt
     1201 ctaggaagaa caagtgggtt gagacaccac aacccagagt gcctcaatgt ctttccctga
     1261 ttccacactc agttccttga cactcaggtc tctctcaaat gcccccttct ggaggggcct
     1321 tccaaccagc atctctgaag tcattcctgc cagctggtca ctgccctgta ctgtgattgt
     1381 ttggtctagt ttttctgaag cttagtctta tgtagctcag gctggcctct aaaattttta
     1441 tgtagctcaa gctggattta aacttttgat cctcctgctt cagcatctcc agtgctagta
     1501 tgacaggctt tgtgcaaaca cccacagccc catcctggga ccaccttttc agtgggaagg
     1561 cagtggctat gaagcaggga attttgtctt ctgtctccat cagtgcctag cacagcccgg
     1621 gaggccctgc cttagccagg agccttctgg atacctgata agccctttcc tggtttccag
     1681 ggacaatgat gtttttgtag caagacgcct ttttgatacc ctaagagaat ctatttttta
     1741 aatcctggtt tctgtgctgc ctagagccta tgatggtgag ggtgcattgc ccttgttaga
     1801 gcagtgagag gaaggggccc cacaagccct tgcacccaga ggtggtgtct gttgaattcc
     1861 atgacctgtg cgctcaggga aattgtcctt gagcagccac caagatagaa ggtagggggt
     1921 gttcgaaaca gaagggcctc cagccatcca gtctacccag agtctgacat ggaccctcag
     1981 tgtgggagac agaggcccat tttttcttgg ggatggagga aagaagggag ctatctgtat
     2041 agaaggcaga ctagggcctg tctgcaccag aataaattgg ctatttctca a
//
