LOCUS       NM_028813               2737 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus vitrin (Vit), transcript variant 1, mRNA.
ACCESSION   NM_028813 XM_128764
VERSION     NM_028813.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Anam,M.B., Ahmad,S.A.I., Kudo,M., Istiaq,A., Felemban,A.A.M.,
            Ito,N. and Ohta,K.
  TITLE     Akhirin regulates the proliferation and differentiation of neural
            stem cells/progenitor cells at neurogenic niches in mouse brain
  JOURNAL   Dev Growth Differ 62 (2), 97-107 (2020)
   PUBMED   31943155
REFERENCE   3  (bases 1 to 2737)
  AUTHORS   Abdulhaleem,F.A., Song,X., Kawano,R., Uezono,N., Ito,A., Ahmed,G.,
            Hossain,M., Nakashima,K., Tanaka,H. and Ohta,K.
  TITLE     Akhirin regulates the proliferation and differentiation of neural
            stem cells in intact and injured mouse spinal cord
  JOURNAL   Dev Neurobiol 75 (5), 494-504 (2015)
   PUBMED   25331329
REFERENCE   4  (bases 1 to 2737)
  AUTHORS   Elsen,G.E., Hodge,R.D., Bedogni,F., Daza,R.A., Nelson,B.R.,
            Shiba,N., Reiner,S.L. and Hevner,R.F.
  TITLE     The protomap is propagated to cortical plate neurons through an
            Eomes-dependent intermediate map
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4081-4086 (2013)
   PUBMED   23431145
REFERENCE   5  (bases 1 to 2737)
  AUTHORS   Lachke,S.A., Ho,J.W., Kryukov,G.V., O'Connell,D.J., Aboukhalil,A.,
            Bulyk,M.L., Park,P.J. and Maas,R.L.
  TITLE     iSyTE: integrated Systems Tool for Eye gene discovery
  JOURNAL   Invest Ophthalmol Vis Sci 53 (3), 1617-1627 (2012)
   PUBMED   22323457
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2737)
  AUTHORS   Tamplin,O.J., Cox,B.J. and Rossant,J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   7  (bases 1 to 2737)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   8  (bases 1 to 2737)
  AUTHORS   Manabe,R., Tsutsui,K., Yamada,T., Kimura,M., Nakano,I., Shimono,C.,
            Sanzen,N., Furutani,Y., Fukuda,T., Oguri,Y., Shimamoto,K.,
            Kiyozumi,D., Sato,Y., Sado,Y., Senoo,H., Yamashina,S., Fukuda,S.,
            Kawai,J., Sugiura,N., Kimata,K., Hayashizaki,Y. and Sekiguchi,K.
  TITLE     Transcriptome-based systematic identification of extracellular
            matrix proteins
  JOURNAL   Proc Natl Acad Sci U S A 105 (35), 12849-12854 (2008)
   PUBMED   18757743
REFERENCE   9  (bases 1 to 2737)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
REFERENCE   10 (bases 1 to 2737)
  AUTHORS   Mayne,R., Ren,Z.X., Liu,J., Cook,T., Carson,M. and Narayana,S.
  TITLE     VIT-1: the second member of a new branch of the von Willebrand
            factor A domain superfamily
  JOURNAL   Biochem Soc Trans 27 (6), 832-835 (1999)
   PUBMED   10830112
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK158117.1, BC034120.1 and AI835120.1.
            
            On Oct 2, 2010 this sequence version replaced NM_028813.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158117.1, BC034120.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                AK158117.1         4-80
            78-2709             BC034120.1         1-2632
            2710-2737           AI835120.1         1-28                c
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 49.38 cM"
     gene            1..2737
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /note="vitrin"
                     /db_xref="GeneID:74199"
                     /db_xref="MGI:MGI:1921449"
     exon            1..263
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            264..333
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            334..399
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            400..556
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            557..690
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            691..768
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            769..954
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            955..999
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1062
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..1210
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1314
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1541
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            1542..2055
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     exon            2056..2720
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2689..2694
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /note="hexamer: AATAAA"
     polyA_site      2706
                     /gene="Vit"
                     /gene_synonym="1700052E02Rik; 1700110E08Rik;
                     2810429K11Rik; AKH; akhirin"
                     /note="major polyA site"
ORIGIN      
        1 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gcctgtgtgt tacaaaatgc
       61 cctttccaaa gggctgagaa ctggatagga atgtttgctt ggctcgcctg agaagagaaa
      121 agattcctcg acctcctctt gcttcttctt tagaataatt tggatgggat ttgtgatgca
      181 gaaaagctta aagaaaaaag gataaccgtt ctttgtggtg gaaagtttag gggggaaaaa
      241 acccactgct ttcttcaaac aagggtgcca ttctgatatt tatgggaatt gttgttccca
      301 ctatgaaggc atctgttatt gaagtgttgc ttgttttgct ggtaactgga atacattcaa
      361 ataaagaaac gccaaagaag actaaaaggc ccaaactcac tgtgcctcag atcaactgcg
      421 atgtcaaagc tggaaagatc atcaatcctg agttcatggt gaaatgtcca gcgggctgcc
      481 aggaccccaa ataccatgtt tacggcactg gcgtctacgc gtcttactcc agcgtgtgtg
      541 gcgccgcaat tcacagcggt gtgctggata attcaggagg gaaaatactt gttcggaaag
      601 ttgctgggca gtctggttac aaaggaagct actcgaatgg ggttcagtct ttatctttac
      661 ccagatggcg agagtccttc atcgtcgcag aaagtaagcc ccaaaagggt gtagcctacc
      721 catcgactct tacatattca tcatcgaaaa ctgcagctgc taaagcaggt gagaccacaa
      781 aagcctatga gaagccatct attccaggga caaccataca gcctgtcacc ctgacacagg
      841 ctcaagctac ccctgtagct gaggtcaccc acagatccac ctcaaagcca tttgcagcat
      901 ctgtcaccaa cagccccaga ccccaacctg tgggccacag gagtcaggag atggaagagg
      961 tggacgggtg gaagcctgga ccagtccttt tagattcagg atttgtgcca aaagaagaac
     1021 tcagcacaca gtcttcggag ccagtgccgc agggagatcc aaactgcaaa attgacttgt
     1081 ccttcttaat tgatgggagc accagcatcg gcaagcgccg cttccggatc cagaagcagt
     1141 tcctagcgga cgtcgtccag gctcttgaca tcggccctgc cggtcccctc gtgggtgttg
     1201 ttcagtacgg agacaatcct gctacccagt ttaacctcaa aactcacatg aattctcaag
     1261 atctgaagac agctatagag aaaattaccc agagaggagg cctttctaat gtaggccgtg
     1321 ccatctcctt tgtaaccaag accttctttt ccaaagccaa tgggaacaga ggtggtgctc
     1381 ccaatgtggc tgtggtcatg gtggatggct ggcccacaga caaggtggaa gaggtgtcac
     1441 gagttgccag agagtctggg atcaacgtct tcttcatcac cgtcgaaggg gccgccgaaa
     1501 gggacataca gcatgtggtg gagcccggtt ttgccagcaa ggcagtgtgc agaacaaacg
     1561 ggttctactc cttcaatgtg cagagctggc tcagccttca caaaacagtg cagcccctgg
     1621 tgaagcgggt ctgcgacacg gaccgcctag cctgcagcaa gacctgttta aactctgcgg
     1681 acataggctt tgtcatcgat gggtctagca gcatggggac aagcaacttc cgcacggtcc
     1741 tgcagttcgt ggccaacctc agcaaggagt ttgagatttc agacaccgac acacgcgtcg
     1801 gggccgtgca gtacacctac gagcagcggc tcgaatttgg gttcgacaag tataacagca
     1861 aagccgacat cctcagtgcc atcaggaggg tggggtactg gagcggaggc accagcacag
     1921 gggctgccat ccagtatgcc ctcgaacagc tcttcaagaa gtccaaaccg aacaagagga
     1981 aggtaatgat cattatcact gacggcaggt cttacgatga cgtgcggatc ccagccatgg
     2041 ctgcctacca gaagggggtg atcacgtatg caataggcat tgcgtgggct gctcaggacg
     2101 agctggaggt aatggccact caccccgcca aggaccattc cttctttgtg gatgattttg
     2161 acaacctcta caaaattgcc cccaggatca tccagaatat ttgtacagag ttcaactcac
     2221 agcctcgaaa ctgagctggg accagacaga ggatggcaaa cactgtctta cggatccttg
     2281 ggaccatccc tcgccttgtg cctatgggtg ggggtggagt ggggggtagg gggagtttct
     2341 gacagagctt gggaaaaggc gtttggtgtt actattcttt gccattggtg gtgtgcatgc
     2401 ttcaaaacct accaggtaaa aggctggcta ggagctctca ggttgggttc aaatactgca
     2461 tcgctttgtg tgcactgaag aatccacatt ttgacagttg ttttcaaaat agttaatcca
     2521 gaggagagtc cagctcttag gacaggaaag acctgagagg ttataggaag tttgtttaca
     2581 tttcccatta gaactctgta attgtccata agtatctttt tattgttttc ttcccctttt
     2641 ttactttctt tttcttcttt tttgtcatga gaatgtggga gttgctgaaa taaatgtttc
     2701 aaagaatcat gggcacagtt aaaaaaaaaa aaaaaaa
//
