LOCUS       XM_011243976            2518 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus VPS33B interacting protein,
            apical-basolateral polarity regulator, spe-39 homolog (Vipas39),
            transcript variant X2, mRNA.
ACCESSION   XM_011243976
VERSION     XM_011243976.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000078.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011243976.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="12"
     gene            1..2518
                     /gene="Vipas39"
                     /gene_synonym="6720456H09Rik; 9330175H22Rik; hSPE-39;
                     SPE-39; Spe39; Vipar"
                     /note="VPS33B interacting protein, apical-basolateral
                     polarity regulator, spe-39 homolog; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 21 ESTs, 1167 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:104799"
                     /db_xref="MGI:MGI:2144805"
     CDS             102..1577
                     /gene="Vipas39"
                     /gene_synonym="6720456H09Rik; 9330175H22Rik; hSPE-39;
                     SPE-39; Spe39; Vipar"
                     /codon_start=1
                     /product="spermatogenesis-defective protein 39 homolog
                     isoform X1"
                     /protein_id="XP_011242278.1"
                     /db_xref="GeneID:104799"
                     /db_xref="MGI:MGI:2144805"
                     /translation="MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRD
                     IVDDDDDDDLERVSWTGEPVGSISWSIKETAGSSGSTPEGREQLKGRNSFYTQLPKPP
                     STYSLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPELGRPKGEYRDYSNDWSLSDTVQ
                     RLRRGKVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVR
                     QVALRHLIHFLKEIGDQKLLLDLFRFLDRAEELALSHYREHLNIQDPEKRKEFLKTCI
                     GLPFSAEDAAHVQDHYTLLERQIIIEANDRHLESSGQTDIFRKHPRKASILNMPLVTT
                     LFYACFYHYTESEGTFSSPINLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKN
                     WLGYTKKRAPIGFHRVVEILHKNSAPVQILQEYVNLVEDVDTKLNLATKFKCHDVVID
                     TCRDLKDRQQLLAYRSKVDKGSAEEEKIDAILSSSQIRWKN"
ORIGIN      
        1 tgaatacagt agaggttcta ggaatgaatg tttgtggcta attggaatat ctaacatgat
       61 ctgataagct ggaaacccaa ggatctgact tagcatggca gatgaaccgg acaaaaggtg
      121 atgaggagga atattggaac agctccaagt tcaaggcttt cacttttgat gatgaagatg
      181 atgagctctc acagttaaag gaatccaaac gcgcagtgaa tagccttcga gacatcgtgg
      241 atgacgacga tgacgatgac ctggagagag tcagctggac tggagaacct gtgggaagta
      301 tctcatggtc catcaaagag actgctggga gtagcgggtc aacccctgag ggacgtgaac
      361 agctaaaggg ccgaaacagc ttctacacac agctacccaa acctccttct acttactccc
      421 tcagcagctt cttcagaggt agaactagac ctgggagttt ccagtccctt tctgatgctc
      481 tgtcagacac acctgccaaa agttatgctc cagagctggg gaggcctaag ggagaataca
      541 gggattacag caatgactgg agcctcagtg atacagtgca acgcctccgc cggggcaagg
      601 tctgttcact agagcgcttc cgctccctcc aggataagct gcagctccta gaggaggcag
      661 taagcatgca tgatgggaac gtcatcactg cagttctgat cttcctgaag aggaccctga
      721 gcaaagagat cctttttcga gagctggagg tacgccaggt cgcactgaga catctcattc
      781 attttcttaa agaaataggg gaccaaaagc tgcttttaga tctcttcagg ttcctagata
      841 gagcagaaga actggcgcta tcccattatc gagagcactt gaacattcag gaccctgaaa
      901 aacgaaaaga atttcttaag acttgcattg gtttgccatt ttcagcagaa gacgctgcgc
      961 atgtacaaga ccattacacc ctgctggagc gccagatcat catcgaggca aacgaccggc
     1021 acctggagtc ttcagggcag actgatatct tccggaagca cccccgtaaa gcttccattc
     1081 tcaacatgcc gttagtgacg acactcttct acgcctgctt ctatcactac acggagtctg
     1141 agggaacctt cagcagtccc atcaacctga agaaaacatt caagatccca gacaaacagt
     1201 atgtgctgac agccttggct gcgcgtgcca agctgagagc ctggaatgac gttgatgccc
     1261 tgttcaccac aaagaactgg ttgggttaca ccaagaagag agcacccatt ggcttccatc
     1321 gagttgtgga aattttgcac aagaacagtg cccctgtcca gatactgcag gaatatgtca
     1381 atctggtgga agatgtggac accaagttga acttagctac taagttcaag tgccatgatg
     1441 tcgtcattga tacttgccga gacctgaagg atcgtcagca gttgcttgca tacaggagca
     1501 aagtagacaa aggatccgcc gaggaagaga agattgacgc cattctcagc agctcgcaaa
     1561 ttcgatggaa gaactaaggg tcctttgcta ccctgaagcc tcctcgcttc ttacttttct
     1621 ttctgcctat gaaaacagag agctctcttc ttaggagagt cacagcattc tacacgtgag
     1681 cctgtcattc acaggcagtg cctgctggtt tagggacaga aaccagcctt tgagcacatg
     1741 tatcttcaga ctgatctgtc caggggacat tacttacagg ccagtagcta aaggctcgga
     1801 ctctcaagaa agatgctctg caccggtgcc tgtggaaagg tgggggccca tcctgggcaa
     1861 gatgcctgtg ctcagagaaa agtgaccact ccagaaacac gtcgggacta agccacaagt
     1921 gtctcggggt ggcagtgaca ttcctctgtc ctttcagctg ttcttaccca gaacctggtg
     1981 ttgggcatag gcatttcact ctaaaggagt cagaacagaa ctaaattgac tcttcagggg
     2041 cctcggaaag ggatatcagt attgctcagg acctgctgga aaccagaccc aagttctcaa
     2101 gacacagggc cactcatcaa tgacagacac ttcctacaca ttgtgtacct tcagccagta
     2161 tctacctgct gtcacggcac tgtccctgtc aactttgtgt agggacgtgt gagggatata
     2221 gggtccctct gacacctgca cactgtccag gtggtgagcc atctgcttca gcacgtcttc
     2281 tgtttctgtg tcagacacag tcttacatgg aattcagatt caccagtgct ggagcgctct
     2341 ttcaggcaaa aatcatttca ccagaagcag ccacaagtag caccttgttt agatatctcc
     2401 gtagaggccc tgttagcctg ctggggactt gagcagtgtt ccattctgcc ctgtgcctcc
     2461 ctgaacagga tttccctgac atgcctacac tcctaataaa actgttgcat tccttgtg
//
