LOCUS       NM_011701               1834 bp    mRNA    linear   ROD 04-MAR-2025
DEFINITION  Mus musculus vimentin (Vim), mRNA.
ACCESSION   NM_011701
VERSION     NM_011701.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Jasmine, Baraiya,D.H., Kavya,T.T., Mandal,A., Chakraborty,S.,
            Sathish,N., Francis,C.M.R. and Binoy Joseph,D.
  TITLE     Epithelial and mesenchymal compartments of the developing bladder
            and urethra display spatially distinct gene expression patterns
  JOURNAL   Dev Biol 520, 155-170 (2025)
   PUBMED   39798644
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Scavuzzo,M.A., Szlachcic,W.J., Hill,M.C., Ziojla,N.M., Teaw,J.,
            Carlson,J.C., Tiessen,J., Chmielowiec,J., Martin,J.F. and
            Borowiak,M.
  TITLE     Pancreatic organogenesis mapped through space and time
  JOURNAL   Exp Mol Med 57 (1), 204-220 (2025)
   PUBMED   39779976
REFERENCE   3  (bases 1 to 1834)
  AUTHORS   Feng,W., Hong,N., Wu,Y., Huang,J., Zhang,Q., Liu,G., Qian,Z.,
            Chen,Y., Jin,L., Ding,X., Zhao,P., Chen,A.F. and Yu,Y.
  TITLE     Deficiency of Sox7 leads to congenital aortic stenosis via abnormal
            valve remodeling
  JOURNAL   J Mol Cell Cardiol 199, 81-94 (2025)
   PUBMED   39746830
REFERENCE   4  (bases 1 to 1834)
  AUTHORS   Ma,R., Prigge,A.D., Ortiz Serrano,T.P., Cheng,Y., Davis,J.M.,
            Lou,K.F., Wood,W.A., Do,H.C., Ren,Z., Fulcer,M.M., Lotesto,M.J.,
            Singer,B.D., Coates,B.M. and Ridge,K.M.
  TITLE     Vimentin modulates regulatory T cell receptor-ligand interactions
            at distal pole complex, leading to dysregulated host response to
            viral pneumonia
  JOURNAL   Cell Rep 43 (12), 115056 (2024)
   PUBMED   39645657
REFERENCE   5  (bases 1 to 1834)
  AUTHORS   Nasim,S., Abujamra,B.A., Chaparro,D., Nogueira,P.D.S., Riva,A.,
            Hutcheson,J.D. and Kos,L.
  TITLE     Multiple cell types including melanocytes contribute to
            elastogenesis in the developing murine aortic valve
  JOURNAL   Sci Rep 14 (1), 25481 (2024)
   PUBMED   39461968
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1834)
  AUTHORS   Salier,J.P., Simon,D., Rouet,P., Raguenez,G., Muscatelli,F.,
            Gebhard,W., Guenet,J.L. and Mattei,M.G.
  TITLE     Homologous chromosomal locations of the four genes for
            inter-alpha-inhibitor and pre-alpha-inhibitor family in human and
            mouse: assignment of the ancestral gene for the lipocalin
            superfamily
  JOURNAL   Genomics 14 (1), 83-88 (1992)
   PUBMED   1385302
REFERENCE   7  (bases 1 to 1834)
  AUTHORS   Pilz,A., Moseley,H., Peters,J. and Abbott,C.
  TITLE     Comparative mapping of mouse chromosome 2 and human chromosome 9q:
            the genes for gelsolin and dopamine beta-hydroxylase map to mouse
            chromosome 2
  JOURNAL   Genomics 12 (4), 715-719 (1992)
   PUBMED   1315305
REFERENCE   8  (bases 1 to 1834)
  AUTHORS   Porteus,M.H., Brice,A.E., Bulfone,A., Usdin,T.B., Ciaranello,R.D.
            and Rubenstein,J.L.
  TITLE     Isolation and characterization of a library of cDNA clones that are
            preferentially expressed in the embryonic telencephalon
  JOURNAL   Brain Res Mol Brain Res 12 (1-3), 7-22 (1992)
   PUBMED   1372074
REFERENCE   9  (bases 1 to 1834)
  AUTHORS   Bastian,H., Gruss,P., Duboule,D. and Izpisua-Belmonte,J.C.
  TITLE     The murine even-skipped-like gene Evx-2 is closely linked to the
            Hox-4 complex, but is transcribed in the opposite direction
  JOURNAL   Mamm Genome 3 (4), 241-243 (1992)
   PUBMED   1611218
REFERENCE   10 (bases 1 to 1834)
  AUTHORS   Threadgill,D.S. and Womack,J.E.
  TITLE     Mapping HSA10 homologous loci in cattle
  JOURNAL   Cytogenet Cell Genet 57 (2-3), 123-126 (1991)
   PUBMED   1655359
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK133726.1.
            
            On Apr 23, 2009 this sequence version replaced NM_011701.3.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133726.1, AK153019.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1834              AK133726.1         2-1835
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 10.04 cM"
     gene            1..1834
                     /gene="Vim"
                     /note="vimentin"
                     /db_xref="GeneID:22352"
                     /db_xref="MGI:MGI:98932"
     exon            1..684
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     CDS             122..1522
                     /gene="Vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="NP_035831.2"
                     /db_xref="CCDS:CCDS15696.1"
                     /db_xref="GeneID:22352"
                     /db_xref="MGI:MGI:98932"
                     /translation="MSTRSVSSSSYRRMFGGSGTSSRPSSNRSYVTTSTRTYSLGSAL
                     RPSTSRSLYSSSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTN
                     EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQ
                     VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARL
                     DLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQY
                     ESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALK
                     GTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA
                     LDIEIATYRKLLEGEESRISLPLPTFSSLNLRETNLESLPLVDTHSKRTLLIKTVETR
                     DGQVINETSQHHDDLE"
     exon            685..745
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            746..841
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            842..1003
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1129
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1350
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            1351..1394
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1480
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1834
                     /gene="Vim"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1816..1821
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vim"
                     /note="hexamer: AATAAA"
     polyA_site      1834
                     /gene="Vim"
                     /note="major polyA site"
ORIGIN      
        1 ctctgccact cttgctccgg gaccccagag accccagcgc tcctacgatt cacagccacc
       61 gcgccctcat tcccttgttg cagtttttcc agccgcagca agccagccca ccttcgaagc
      121 catgtctacc aggtctgtgt cctcgtcctc ctaccgcagg atgttcggtg gctccggcac
      181 atcgagccgg cccagctcca accggagcta tgtgaccacg tccacacgca cctacagtct
      241 gggcagcgca ctgcgcccca gcactagccg cagcctctat tcctcatccc ccggtggcgc
      301 ctatgtgacc cggtcctcgg cagtgcgcct gcggagcagc gtgccgggcg tgcggctgct
      361 tcaagactcg gtggacttct cgctggccga cgccatcaac actgagttca agaacacccg
      421 caccaacgag aaggtagaac tgcaggagct gaatgaccgc tttgccaact acatcgacaa
      481 ggtgcgcttc ctcgagcagc agaacaaaat cctgctggct gagctcgagc agctcaaggg
      541 ccagggcaag tcgcgcctgg gcgacctgta cgaggaggag atgcgggagc tgcgccggca
      601 ggtggatcag ctcaccaacg acaaggcccg tgtcgaggtg gagcgggaca acctggccga
      661 ggacatcatg cggctgcgag agaaattgca ggaggagatg ctccagagag aggaagccga
      721 aagcaccctg cagtcattca gacaggatgt tgacaatgct tctctggcac gtcttgacct
      781 tgaacggaaa gtggaatcct tgcaggaaga aattgccttt ttgaagaaac tgcacgatga
      841 agagatccag gagctgcagg cccagattca ggaacagcat gtccagatcg atgtggacgt
      901 ttccaagcct gacctcactg ctgccctgcg tgatgtgcgc cagcagtatg aaagcgtggc
      961 tgccaagaac ctccaggagg ccgaggaatg gtacaagtcc aagtttgctg acctctctga
     1021 ggctgccaac cggaacaacg atgccctgcg ccaggccaag caggagtcaa acgagtaccg
     1081 gagacaggtg cagtcactca cctgtgaagt ggatgccctt aaaggcacta acgagtccct
     1141 ggagcgccag atgcgtgaga tggaagagaa ttttgccctt gaagctgcta actaccagga
     1201 cactattggc cgcctgcagg atgagatcca aaacatgaag gaagagatgg ctcgtcacct
     1261 tcgtgaatac caagatctgc tcaatgttaa gatggccctg gacattgaga tcgccaccta
     1321 caggaagctg ctggaaggcg aggagagcag gatttctctg cctctgccaa ccttttcttc
     1381 cctgaacctg agagaaacta acctggagtc acttcctctg gttgacaccc actcaaaaag
     1441 aacactcctg attaagacgg ttgagaccag agatggacag gtgatcaatg agacttctca
     1501 gcatcacgat gaccttgaat aaaaattgca cacacttggt gcaacagtgc agtaccagca
     1561 agaaggaaaa aaaaatcgta tcttaggaaa acagctttca agtgccttta ctgcagtttt
     1621 tcaggagcgc aagatagatt tggaatagaa agaagctcag cacttaacaa ctgacacccc
     1681 aaaagacgta gaaaaggttt acaaaataat ctagtttacg aagaaatctt gtgctagaat
     1741 actttttaaa gtatttttga ataccattaa aactgctttt ttccagtaaa tatctgacca
     1801 acttgttact gcttcaataa atcttcaaaa atac
//
