LOCUS       XM_006502142            5762 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ventricular zone expressed PH
            domain-containing 1 (Veph1), transcript variant X1, mRNA.
ACCESSION   XM_006502142
VERSION     XM_006502142.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006502142.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5762
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..5762
                     /gene="Veph1"
                     /gene_synonym="2810471M23Rik; Veph"
                     /note="ventricular zone expressed PH domain-containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 6 ESTs, 13 long SRA reads, 7
                     Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:72789"
                     /db_xref="MGI:MGI:1920039"
     CDS             880..3483
                     /gene="Veph1"
                     /gene_synonym="2810471M23Rik; Veph"
                     /codon_start=1
                     /product="ventricular zone-expressed PH domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_006502205.1"
                     /db_xref="GeneID:72789"
                     /db_xref="MGI:MGI:1920039"
                     /translation="MEYEVYQLLRGFLSLTLTTDHGPGFTEIQLIQHTMHQLFRLVLG
                     QKDLSKAGDLFSLDDAEIEDSLTEALEQIKVISSSLDYQTNNNDQAVVEICITRITTA
                     IRETESIEKHARALVGLWDSCLEHNLRPAGKDEDTPHAKIASDIMSCILQNYNRTPVM
                     VLAVPIAVKFLHRGSKELCRNMSNYLSLAAITKADLLADHTEGIIKSILQGNAMLLRV
                     LPAVYEKQPQPINRHLAELLALMSQLEQTEQYHLLRLLHVAAKRKDVEVVQKCVPFLI
                     RNLKDSTYNDIILNILIEIAGHEPLALNSFLPMLKEIAEQFPYLTGQMARIFGAVGHV
                     DEERARSCLRYLVSQLANMEHPFHHILLLEIKSITDAFSSILGPHSRDIFRMSNSFTN
                     IAKLLSRQLENSKADSSRRKTSTEVSIPEKLRELNSMEPESEDHEKLQVKIQAFEDKI
                     NAESNTPGSGRRYSLDHISKEERKSIRFSRSRSLALNTVLTNGVSVEDNEVEEKAGMH
                     ASISLSQIDPLSHGIGKLPFKTDTHGSPLRNSSASHPSIIHTEPETMPETFKENIQEE
                     ILEAATSPIEYQDKLYLHLRENLSKVKAYALEIAKKVPIPDQCTIEDTMRSCVAKLFF
                     TCSLKGHYCLYSKSSFILVSQAPQPWIQVMFLSQQSLFPEPLSIQSGSVQFLKALWEK
                     TQDTGAHSFEVAMTESTFPQQKDLEQLQLHLEEVRFFDVFGFSETAGAWQCFMCNNPE
                     KATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTHYFTLAGNQLLFQKGKSKDDPDDSPI
                     ELSKVQSVKAVAKKRRDRSLPRAFEIFTDSKTYVFKAKDEKNAEEWLQCINVALAQAK
                     ERESREVTTYL"
ORIGIN      
        1 ccataatatt tgatcgatgt agatcagcag ttctcaacct gtgggaggag accccttggt
       61 ggtcaaatga ctatttcaca gaagcaatac attacaattc ataacagtag caaaattaca
      121 ggtaggaagt agcttccgtt ttatgtttgg gatcacaaca tgaggaactg tattaaaggg
      181 tgtcgtcatt aggaagccac tgatgtagat gggtcaggca gaacctccca aattctagca
      241 aatggagtgc aaagttgtgt ggtttggtag aaccagtttg ttccctccac ttgtaactct
      301 tggtatcctc aaactttcac tgccattcat ctagaggcag ggcgagaggg tcatttcttc
      361 caggctgtga ctctacctac acaaggctct ctgttttgaa ctcctgtgtc tcactaagtt
      421 tcctgctccc gctgggggcc ccggtcatcc catcaccggc tccagctggc ctaccaacca
      481 gaccggcttc ctgcgtggct tccccgcccc cacccgatct cggaagaaag tgtagatttc
      541 cacgaacaca gggcgttctg tcttctcggt ctacagcagc tctggtttac tggagctgcc
      601 tttgtgcttg gaggtagctc tgccctggag ccagagcagt cggtcacctg acccgcccag
      661 ggagcagccg gtggcttccg ctgcattcct ggaattcttc cacgccgccc gggtgggtgg
      721 atggctgcgg gggtcactga gctgcactgg ggcttgctgc cacctccagc ctgggcttgg
      781 gcttgaagct ttcaaccaga ggcagcaatt gagccttgga ggagtagctc gcagagacag
      841 ccaaaggaga ccttagagcc tgcagaacca tggctcttca tggaatatga agtgtaccag
      901 ctgctacgtg gttttctatc tctaaccctg acaactgacc atggccctgg attcacagaa
      961 atccaactga tccaacacac aatgcatcaa cttttcagat tggttttggg acaaaaagat
     1021 ctttcaaaag ctggggacct cttctcttta gatgatgctg agattgaaga cagcctgaca
     1081 gaagctttgg agcagattaa agtaattagc tcatctttgg attaccaaac taataacaat
     1141 gaccaggcgg tggttgaaat ctgtatcaca aggattacca cagccatcag agagacagaa
     1201 tccattgaaa agcatgccag agccctggtg gggctgtggg attcctgctt ggaacacaac
     1261 ctgagacctg cagggaaaga cgaagatact ccacatgcaa aaatcgcctc tgatatcatg
     1321 agttgcatct tacagaatta caaccggacc cctgtgatgg tcttagctgt ccccatcgca
     1381 gtgaaattcc tccacagagg cagcaaggag ctgtgtagga acatgtccaa ctacctgtcc
     1441 ctggctgcca tcaccaaggc ggatctgctg gctgaccaca ctgaagggat aataaagagc
     1501 atactccaag gaaatgccat gctgttaagg gtgctacctg ctgtatatga aaagcagccc
     1561 caaccaatca acagacacct ggcagaactc ctggccttga tgtctcaatt ggagcagaca
     1621 gaacagtacc atctactaag gcttctgcac gtagcagcaa agagaaaaga tgtggaggtg
     1681 gttcagaaat gtgttccttt cctgatcaga aatttgaagg attcaaccta taatgacatc
     1741 atcctaaaca ttctcataga aatagcaggc catgagccac tggccttgaa cagtttcctc
     1801 ccgatgctga aagagattgc agagcaattc ccctacctca ctggacagat ggcaaggatc
     1861 tttggtgctg ttggtcatgt ggatgaagag agagccagga gctgcctacg atacctggtg
     1921 agccagctgg ctaatatgga gcatccattc caccatattc tcctgctgga aattaagagt
     1981 atcacagatg ccttctcctc catcctgggc ccgcacagca gggacatctt ccgaatgagc
     2041 aacagcttca ccaacattgc caagctcctt tccagacaac tggaaaacag caaggctgac
     2101 agtagcagga gaaaaaccag cactgaagtt agcattcctg agaaactgag agaactcaat
     2161 tccatggagc ctgaaagtga agaccatgaa aaactccaag ttaaaatcca agcctttgaa
     2221 gacaaaataa atgctgagag caatacccca ggctctggcc ggagatacag cttagaccac
     2281 atctctaagg aagaacgaaa aagcattaga tttagcaggt ccagaagttt ggctttgaat
     2341 actgtgctca caaacggtgt gagtgtggaa gataacgaag tcgaagaaaa ggcaggaatg
     2401 cacgccagca tctctctttc gcaaatagac ccactcagcc acgggattgg caagttgccc
     2461 tttaagacag acactcatgg atcaccactg agaaattcct cagcttcaca cccaagtatt
     2521 atacatactg aaccagagac tatgcccgaa acttttaaag aaaacatcca agaagaaatt
     2581 ctagaggcag ccacaagtcc tattgaatac caagataagc tctacttgca tttaagggaa
     2641 aacctcagca aagtgaaggc ttatgccttg gaaatcgcaa aaaaggtccc aatcccagac
     2701 cagtgcacca ttgaagatac tatgagaagt tgcgtggcaa agctgttctt tacctgttct
     2761 ttaaagggcc attactgcct atacagcaag tccagcttca tccttgtcag ccaagcaccc
     2821 cagccgtgga tccaggtcat gtttctctcc caacagagcc tgtttcctga gcccctgtcc
     2881 attcagagtg ggtctgtgca gttcctcaaa gccctatggg agaaaacgca ggacacggga
     2941 gcgcacagct ttgaagtcgc catgacagag tccacctttc cacagcagaa ggatctggag
     3001 cagcttcagc tccatctgga agaagtgcgg ttcttcgacg tgtttggctt cagtgaaaca
     3061 gcgggggcat ggcagtgctt catgtgcaac aaccctgaaa aggcaactgt tgtaaatcaa
     3121 gatggccagc ctctcatcga aggaaaactt aaggagaaac aagtgaggtg gaagttcatc
     3181 aagaggtgga aaacgcatta ttttacactg gccggaaacc aacttctgtt tcaaaagggg
     3241 aaatctaagg atgaccctga tgattccccg atagaactca gcaaggtaca gagcgtgaaa
     3301 gctgtggcta agaaacgccg ggaccgctct ctgcctcggg cgtttgaaat cttcacagat
     3361 agtaagacct atgttttcaa agccaaggat gagaagaacg cagaggaatg gctgcagtgc
     3421 atcaacgtgg cgctggccca ggcaaaggag agggaaagcc gagaagtaac cacatatctg
     3481 tagcgattcg cacacccgct cttatggcca tgcaagataa gcattgccag tgtcaacaaa
     3541 gaggaaccca ccatggcgct attgggtttc actaaatacc agggaaacca ttatccctaa
     3601 ggagagccta aaatggcagg gttctcagta aacctcacgc cctcgcaact ctggtattaa
     3661 ctccaagttt tctgcctgaa gttcatgaga aagagaggcc acggagttca cagtggatcg
     3721 tgtgggccag aaagggaacg ctgcgaataa aagaacttct gtagctatgt gatttatgac
     3781 tgtaagaaaa cagtgagtgg ggccagcagg aaggctcagc aggtaaaggg cacttgctgc
     3841 caagccagat tgcctgagtt ctagccccat aactgacttg gtggaaggag aactaactct
     3901 tggcggtttt cctctgtttt ctgcatgcca tggcacatct atttccccag tttaaaaaag
     3961 aaaaagaaat taattaatta attaattaaa ttttaaaaca acagaggcct gaaagatcca
     4021 tcttgaagga aaactgtcac attaaagaca ttttttaata tttttattag gtattttcct
     4081 catttacatt tccaatgcta tcccaaaagt cccccatacc ctccccccac tcccctaccc
     4141 acccactccc actttttggc cctggcattc ccctgtactg gggcatatac agtttgcatg
     4201 accaatgggc ctctctttcc agtgatggcc gactaggcca tcttttgata catatgcagc
     4261 tagagacaag agcttaaaaa ccattaggag ccaggcagtg gtggcgcatg cctttaatcc
     4321 cagcacttgg gagacagagg caggtagatt tctaaattcg aggccagcct ggtctacaga
     4381 gtgagttcca gaacagccag ggctatacag agaaacactg tctcaacccc catccttcaa
     4441 aaaaaaaaaa aattaggaaa agttgaacta aggtacattc aagaaaacca ttaacttcag
     4501 tatattagtt agctttctgt tccgtggcaa aataccctga tgaaaatagc gtacaggcga
     4561 aaggatttat tttgtttatg gttccagagg gatggagtcc attgtgtcag ggaatacatg
     4621 gcaccaggca gaaaaagcac agcagcaaga acaagatgct ggctgattct tatttagacc
     4681 gaggaagcag tgaaggtggg aagtagggtg tggtaataaa ccacaaggcc cacctccatc
     4741 gatgtacttc ctctaccaag gctccgcccc cccaggggct ccgtaacttc ctgaagcagt
     4801 cctacaatgg ggccacgcat tcaaatatgt gagcatatgg aggcattaaa attgttcaat
     4861 tatttaaatt accacactta aacatttatc ttctcaacac agaagatggc agcacatgtt
     4921 acaatgactc ttattccagt tacataatta aatttaggct cttattagag tgtaaattgg
     4981 attttaatgt ttagacacgt ggttctatct actgtctgag gcagtaaaaa agaataagaa
     5041 tagaaagaca ccttttcttc tttgtaaata tatgcatcac ctcccttaaa attgaagatt
     5101 tttttaatta aaattctgtg gttttcttct ctgtgttaag cgttgtagtg cccaaattat
     5161 aagcatttat tggtttttcc tattaccctt atataatttt gaattaagct gccataggca
     5221 gtttaggtga catccagtga cctgtgcccc gtaataatgt tctgcccctt gagtggtgga
     5281 gggtgggacc tgaagcgtgc ttctaactta cataatatgg caaaggtgac agaattgtct
     5341 ctcctacaat tgtgttacat tacaacggaa attttaaaat taacagatga attaaggtct
     5401 ctcagatgtc ttaagtaaac tgatacatcc tgaatagcca ggttatcagc taagttattt
     5461 acgtcagcct ctcctagtga acttgaataa gctgccacgg aactatcgct gcaaggcaag
     5521 gagtgagcct gtgccaacat ccacgtgacc ctgaacaaca gtgagcctct cgggatccag
     5581 cccaccatca ccttgttcgg agctatgagg tcctctgctc agagggccgg gataagatgg
     5641 agtcctgccc ccacagaaac tatgcagtaa caatgtatcc tgctttaaat gcaaaccatg
     5701 tggtgatttg ttatgcactg attaattcat ataaaacccc gctggtaata tatcaaagat
     5761 aa
//
