LOCUS       NM_001359039            1321 bp    mRNA    linear   ROD 08-FEB-2024
DEFINITION  Mus musculus VCP nuclear cofactor family member 2 (Vcf2),
            transcript variant 5, mRNA.
ACCESSION   NM_001359039
VERSION     NM_001359039.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1321)
  AUTHORS   Reinius,B., Johansson,M.M., Radomska,K.J., Morrow,E.H.,
            Pandey,G.K., Kanduri,C., Sandberg,R., Williams,R.W. and Jazin,E.
  TITLE     Abundance of female-biased and paucity of male-biased somatically
            expressed genes on the mouse X-chromosome
  JOURNAL   BMC Genomics 13, 607 (2012)
   PUBMED   23140559
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1321)
  AUTHORS   Mu,X., Zhao,S., Pershad,R., Hsieh,T.F., Scarpa,A., Wang,S.W.,
            White,R.A., Beremand,P.D., Thomas,T.L., Gan,L. and Klein,W.H.
  TITLE     Gene expression in the developing mouse retina by EST sequencing
            and microarray analysis
  JOURNAL   Nucleic Acids Res 29 (24), 4983-4993 (2001)
   PUBMED   11812828
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL808140.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660819.26513.1,
                                           SRR1660811.124546.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164132, SAMN01164136
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                AL808140.5         70381-70459         c
            80-179              AL808140.5         31651-31750         c
            180-1321            AL808140.5         9084-10225          c
FEATURES             Location/Qualifiers
     source          1..1321
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 68.46 cM"
     gene            1..1321
                     /gene="Vcf2"
                     /gene_synonym="2700081K05Rik; 6330540D07Rik; CXorf44-like;
                     Tmem29"
                     /note="VCP nuclear cofactor family member 2"
                     /db_xref="GeneID:382245"
                     /db_xref="MGI:MGI:1923420"
     exon            1..79
                     /gene="Vcf2"
                     /gene_synonym="2700081K05Rik; 6330540D07Rik; CXorf44-like;
                     Tmem29"
                     /inference="alignment:Splign:2.1.0"
     exon            80..179
                     /gene="Vcf2"
                     /gene_synonym="2700081K05Rik; 6330540D07Rik; CXorf44-like;
                     Tmem29"
                     /inference="alignment:Splign:2.1.0"
     exon            180..1321
                     /gene="Vcf2"
                     /gene_synonym="2700081K05Rik; 6330540D07Rik; CXorf44-like;
                     Tmem29"
                     /inference="alignment:Splign:2.1.0"
     CDS             303..917
                     /gene="Vcf2"
                     /gene_synonym="2700081K05Rik; 6330540D07Rik; CXorf44-like;
                     Tmem29"
                     /note="isoform a is encoded by transcript variant 5;
                     transmembrane protein 29"
                     /codon_start=1
                     /product="protein VCF2 isoform a"
                     /protein_id="NP_001345968.1"
                     /db_xref="CCDS:CCDS53218.1"
                     /db_xref="GeneID:382245"
                     /db_xref="MGI:MGI:1923420"
                     /translation="MDPLQKWDPMSISVPSCIATVSSSQEASAAPQPSSSEKLSMGLS
                     ILSVSPSPRSSVPASLSEGLFQQQAREKKALWQQYWEKQGFPQRKKVFLRHSRRWHRD
                     HMAPYLLERDLRGFPSGDKAQNQLRCQGHVQNIAGMSGQKNAAPNPPSWEMLVQGLNG
                     LTLSLGANRPVPLPEEPWQQQEPEDMRQLERQQENLKMFQRMLK"
ORIGIN      
        1 ggacttcggc tgattttcgc tagggtgagg atgggcgttc gggctttcat cgcggattcg
       61 gatcgccgta ctctcttagg aaaagaagac cagatgataa tgaggatgac aactaccgtc
      121 cccctcgttc gaagaggatt aagaaggacc aggacataca ggaacatcat gctatagagt
      181 ctggattttc ctggcttcat acatccctcc tagctctcgc ctagttaatc cacaagcctc
      241 cactttcact tttcttcctg gagccagggc tcagtgtggc ccccagctca gactagaccc
      301 ccatggatcc actgcagaaa tgggatccaa tgtcaatttc cgtgccctca tgtatagcca
      361 ctgtgagtag ctctcaagag gcctcagcag cccctcagcc ttcctcttca gaaaagctaa
      421 gcatgggtct cagcatcttg agcgtcagcc ccagcccccg ctccagtgtc cctgcttctc
      481 tgtcagaggg gctgttccag cagcaggccc gggagaagaa ggccctgtgg cagcagtact
      541 gggagaagca gggctttcct cagaggaaga aagtcttcct gaggcattcg agacgctggc
      601 accgggatca catggcacct tacctgcttg aaagggatct cagaggcttt ccctcaggtg
      661 acaaagctca gaatcagctt cgatgtcagg gccacgtgca gaatattgct gggatgagtg
      721 ggcagaagaa cgcggcccct aaccctccct cctgggaaat gctggtgcag ggtctcaatg
      781 gccttaccct cagcttggga gccaacagac ccgtccccct gccagaggaa ccttggcagc
      841 agcaggagcc agaggacatg cgccagctgg agaggcagca ggaaaacctg aagatgttcc
      901 agaggatgct caagtagagg atgtaagaag gcggaggtgc tgactcacag atgataaata
      961 catttagaag gtgctgcatt ggtgtcttat gggtgtgaac tcctctgagg tcaaagcagt
     1021 ccactgccag tggatgtgtc ccaacacttg tgctatgatg tgaattgtcc ttggaaagat
     1081 ctcaactacc ctgcctgtct tttagcatgc ctttttggat gtggtgctaa gtgttagcct
     1141 atacagaaga aacctgggta cacgtgatcc ccaaatatgt gtgatgtgat tcatatactg
     1201 agagttttta ctgatttttc ttaagctcaa tacctccttc aacttcttgt taaaaagaac
     1261 tgataccatt tgtatatcta tgtatatctg tgtatataga gagaagacat acatccacct
     1321 g
//
