LOCUS       NM_173016               3684 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus vesicle amine transport protein 1 like (Vat1l), mRNA.
ACCESSION   NM_173016 XM_001001502
VERSION     NM_173016.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3684)
  AUTHORS   Sawai,A., Pfennig,S., Bulajic,M., Miller,A., Khodadadi-Jamayran,A.,
            Mazzoni,E.O. and Dasen,J.S.
  TITLE     PRC1 sustains the integrity of neural fate in the absence of PRC2
            function
  JOURNAL   Elife 11, e72769 (2022)
   PUBMED   34994686
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3684)
  AUTHORS   Osipovich,A.B., Long,Q., Manduchi,E., Gangula,R., Hipkens,S.B.,
            Schneider,J., Okubo,T., Stoeckert,C.J. Jr., Takada,S. and
            Magnuson,M.A.
  TITLE     Insm1 promotes endocrine cell differentiation by modulating the
            expression of a network of genes that includes Neurog3 and Ripply3
  JOURNAL   Development 141 (15), 2939-2949 (2014)
   PUBMED   25053427
REFERENCE   4  (bases 1 to 3684)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   5  (bases 1 to 3684)
  AUTHORS   Fulp,C.T., Cho,G., Marsh,E.D., Nasrallah,I.M., Labosky,P.A. and
            Golden,J.A.
  TITLE     Identification of Arx transcriptional targets in the developing
            basal forebrain
  JOURNAL   Hum Mol Genet 17 (23), 3740-3760 (2008)
   PUBMED   18799476
REFERENCE   6  (bases 1 to 3684)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151998.6 and AC151980.3.
            
            On Jan 31, 2022 this sequence version replaced NM_173016.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056927.1, AK122527.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-331               AC151998.6         93788-94118
            332-461             AC151998.6         118382-118511
            462-677             AC151998.6         124759-124974
            678-820             AC151998.6         159467-159609
            821-924             AC151998.6         170420-170523
            925-980             AC151998.6         172510-172565
            981-1175            AC151998.6         177424-177618
            1176-1259           AC151980.3         168348-168431       c
            1260-3684           AC151980.3         164212-166636       c
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 60.62 cM"
     gene            1..3684
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /note="vesicle amine transport protein 1 like"
                     /db_xref="GeneID:270097"
                     /db_xref="MGI:MGI:2142534"
     exon            1..331
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            332..461
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            462..677
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            678..820
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            821..924
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            925..980
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1175
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1259
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..3684
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3664..3669
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /note="hexamer: AATAAA"
     polyA_site      3684
                     /gene="Vat1l"
                     /gene_synonym="9430073I07; mKIAA1576"
                     /note="major polyA site"
ORIGIN      
        1 attgcactga agagcatccc acattcaaca ggaggaaccc gcgggagagc agacccgacc
       61 ccttcacaac cgcagcctgt gcgccccgcg gcccctcgag cgccatggct aaggaaggcg
      121 tagagaaagc ggaggagacc gaacaaatga ttgagaagga gaccagcaag gaacctgctg
      181 agggcggcga cggctcccac cgcctcgggg atgcccagga gatgcgcgct gtggtgctgg
      241 ccggcttcgg cggactcaac aagctgaggc tctctagaaa ggccatgccg gagccacagg
      301 acggcgagct caagatccgc gtcaaagcct gtggcttaaa cttcattgac ctgatggtgc
      361 gacagggcaa cattgacaac cctcccaaga cccccttggt gccaggattc gaatgttctg
      421 ggattgttga agctctgggg gacagcgtaa aaggatacga gattggagat cgtgtcatgg
      481 catttgtcaa ctacaatgcc tgggctgaag tggtgtgtac tccagtggag tttgtctaca
      541 agatcccaga tgacatgagt ttctctgagg ctgctgcttt ccccatgaat ttcgtcaccg
      601 catacacgat gctctttgaa attgccaacc tccgcgaagg catgtccgtg ctcgtgcact
      661 cagccggcgg tggagtgggt caagctgtgg ctcagctgtg ctctaccgtc cccaatgtga
      721 ccgtctttgg aacagcctct actttcaagc atgaagccat caaagattcg gtgacccacc
      781 tctttgacag aaatgcagac tacgtgcagg aagtaaagag gatctcagct gaaggcgtgg
      841 acatcgtttt ggattgcctg tgtggggaca acactggcaa ggggctcagt ctcctcaaac
      901 ctctggggac ctacatttta tatggttcat ccaacatggt aactggagag accaagagtt
      961 tctttagttt tgcaaagtca tggtggcagg tggagaaagt gaaccccatc aagctgtatg
     1021 aagaaaacaa agtcatcgcc ggattctcac tcctcaatct gctcttcaag cagggccgct
     1081 caggcctcat ccgaggggtg gtagagaagc tcatcgggct gtacaaccag aagaagatca
     1141 agccagtggt ggattcctta tgggccctgg aggaggtaaa agaggccatg cagcgcatcc
     1201 acgaccgagg gaacatcggg aagttaattc tggatgtgga aaagacgccg accccgctga
     1261 tggccaatga cagcacagag accagcgagg caggggagga agaagaggac catgaagggg
     1321 acagcgagaa caaagagagg atgcccttca tccagtaagc cagacctcgc atcggtgaaa
     1381 gtggaggatg gctgggaaga agatggccgc caggagaact cttctgtgcc ccagtgaacc
     1441 aatgctgtag tccagtgtgt gtcgtgtttg tctgcagtca gccaagctaa gaagctgttg
     1501 atcactgttg tgtttggaat taagtgccaa tcccattcca tgcagtattg tgtcccttcc
     1561 tggtctgtgt atcacgctct cccctctccc ttaaagcaaa cccatccttc tttgggtcct
     1621 tcttgacggt tctagaatag ccttgcaaac taatactggc ccacagggcc caaggtcaga
     1681 aaccaggcca cgcttgattg aaaggtgttg tcacggagct ctgttcagat ccccactctt
     1741 cttcgggcca atgacactct ttgcctgcca acaatcagcc atgcctctaa gcatggcact
     1801 taccagtttg gctagtgaca ggagagtagg ccagaagtat tcacgaccct atacatacag
     1861 atttctccaa gcagttactt tgtcactttc cctcttaagt gctacgtccc tgcgtgtgtc
     1921 tctgcacctt acggtctgag cctcttatta accctcttct ctggttctta tttataaacc
     1981 tagggaggca gatgtgggtt ctttcctgga tagaggtggt tcaacagcgt ctgtctaagg
     2041 gaaagctaca gagatctctc ctctgaaacc atatcccatg agcaaagtcc cccctgtgcc
     2101 caatgtagac ccaactcaga tgtcattaaa cttacctggg ttctcactcg cagcctttgt
     2161 agttaccaac tactatttta aagctccttc cctggaaacg cctttcccaa ggaagagctc
     2221 ccttgaagac agtatttggg gttgaaaagt caactggttt ctcttgccta ttcaaagccc
     2281 tttctaatgt gtaacacaca cgagggacac agatggtggc tgcccatcat ctgacgacaa
     2341 gtgcatgatc ctccaacaca caaaaccatg gtgctgattt gcaggttcct tagaggttgg
     2401 aggccaaact gctcaatcaa ataccctgtt caccattcca gcttgaaagg aaacaattct
     2461 tgtcctctct aatcggcttt ggaagtaaca ccagttacca cagaggaaga ggggtctccg
     2521 ctctctgcag tgaggctgtt tattgcctcc ctccccagcc cttctgtcct aagaggtcac
     2581 aaatccgtca ctcacaaaca gagctagata taaaaggcac ccctgtaatg agcacccctg
     2641 agcttatttt tgtcttctgg aaaacccacg tggggttccc atgaccttgg gttggtgttc
     2701 caagtttcta aacgtccttg aggacttaag agggctccag tgttgcccac ttttttctac
     2761 ttaccacttc agggtagcca ccattttcct gtgtgggctg ggaaggaact tgtctccaca
     2821 gttcccccgc ttggtttgca aagtagccac tcacctgtca tttgtcgtgt tcctttatct
     2881 cgatcctgat cttgtgatga tgacttcttc atgccaaata tttacctgaa gggagtcttt
     2941 cctctccgtg acagggaaag tcaaatatga agatgagaaa agaagctacc agccaatagg
     3001 ccaaggggtg agaatatgcg aaagagtgcc agtcagattc ttattttcca tccctgggga
     3061 gagatgctat taaccatgta accagtcgca tttccaccat aagcatgctt gaggatgggt
     3121 agacctgagg accactctct gagtgctatt acaagtatgt agaaatagcc ttttagaaag
     3181 gctaagatta gagtcaggaa ggttcgcctt caggagacac agaacctgac ccacattcgg
     3241 aatccagata gtcttgtcct gtacaactga gaaaccttgg gacgttatct ctccccaaac
     3301 ctgtttggtt tgtttcattc tggaaaacca ttgatcacac atgaaaaccc tctccctctc
     3361 ccgagaacac agaaagagag catctgaggg tgagcagcgg caccatgaag aacaggaggg
     3421 tgggtgggtg agggacaacc ggaatcagtc agttatcccg tggaccttcc ttccctctcg
     3481 tggttgtttc ctggaggaag tgtaaagagt ttatgtttgc cttaagggag cttcgaaggc
     3541 ttctgggaag gtcgagcttt actagaacga accgaacatc gtctaatgtg tctgtggctt
     3601 cagagctttc gttatattgt tatattgtgc ctataaagca aattatgttt acataaaact
     3661 ataaataaag tattcagcat agca
//
