LOCUS       NM_001378420             749 bp    mRNA    linear   ROD 23-FEB-2022
DEFINITION  Mus musculus vesicle-associated membrane protein 9 (Vamp9), mRNA.
ACCESSION   NM_001378420 XM_017321222
VERSION     NM_001378420.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Taniwaki T, Haruna K, Nakamura H, Sekimoto T, Oike Y, Imaizumi T,
            Saito F, Muta M, Soejima Y, Utoh A, Nakagata N, Araki M, Yamamura K
            and Araki K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Araki K, Imaizumi T, Sekimoto T, Yoshinobu K, Yoshimuta J, Akizuki
            M, Miura K, Araki M and Yamamura K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC022062.10.
            
            On Feb 12, 2020 this sequence version replaced XM_017321222.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.250975.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-141               AC022062.10        75210-75350         c
            142-212             AC022062.10        62349-62419         c
            213-309             AC022062.10        58502-58598         c
            310-411             AC022062.10        56672-56773         c
            412-573             AC022062.10        40228-40389         c
            574-749             AC022062.10        30502-30677         c
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5"
     gene            1..749
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /note="vesicle-associated membrane protein 9"
                     /db_xref="GeneID:102639650"
                     /db_xref="MGI:MGI:5595070"
     exon            1..141
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..708
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /codon_start=1
                     /product="uncharacterized protein LOC102639650"
                     /protein_id="NP_001365349.1"
                     /db_xref="GeneID:102639650"
                     /db_xref="MGI:MGI:5595070"
                     /translation="MTITYSCVANGRAVLAELALTGGAYQEAAAKVLRQALLKAEPTT
                     IIQIGSYVYHTLFIDGITYLCATDNGLDIMAPSAFLKKVSDIFTRIPLMSQEHFFPSN
                     ALATDFQQILAQHMMEYNRTRSSSMLSVVKSRVSDVKSVMLRNMDAVLERETETVSVL
                     TEEADDPQATAEEFETTRKIPKRTWWKCFKIVITTLAIPLSIIIILLSTHIIPT"
     exon            142..212
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /inference="alignment:Splign:2.1.0"
     exon            213..309
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /inference="alignment:Splign:2.1.0"
     exon            310..411
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /inference="alignment:Splign:2.1.0"
     exon            412..573
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /inference="alignment:Splign:2.1.0"
     exon            574..749
                     /gene="Vamp9"
                     /gene_synonym="Gm35911"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggcggtcc aactgtagcg ggcggttaga aggcggtccg cttctctcac tggcctgctg
       61 gttatgacga tcacctacag ctgcgttgct aatggccgag cggtcctggc ggagctggcc
      121 ttgaccggcg gcgcctatca ggaagcggct gcaaaggtgc ttagacaagc gcttctgaaa
      181 gctgagccaa cgaccatcat tcaaatagga agctatgtct accatactct ctttattgac
      241 ggaatcactt atttgtgtgc tacagacaat ggcttggata ttatggcacc atctgcattt
      301 cttaaaaaag ttagtgatat ttttacaaga attcctttga tgtcacaaga acattttttt
      361 ccttcaaatg cacttgctac agattttcaa caaatactag cacagcacat gatggaatac
      421 aacagaactc gaagcagcag catgctgtct gtggtgaaga gtcgagtgtc tgacgtaaaa
      481 agtgttatgt tgagaaacat ggacgcagtc ctagaaagag aaacggaaac agtgagtgtc
      541 ctcactgaag aggcagatga cccccaggcg actgctgaag aatttgagac caccaggaaa
      601 attcccaaga gaacatggtg gaagtgcttc aagattgtaa ttaccaccct tgcgattccc
      661 ctgtcaatca ttatcattct cttaagtact cacataatac ccacctgacc aataaagagt
      721 tacatggagt tacagagctc tgcacccaa
//
