LOCUS       NM_030132               2917 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus UTP23 small subunit processome component (Utp23),
            mRNA.
ACCESSION   NM_030132
VERSION     NM_030132.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Wang,M., Anikin,L. and Pestov,D.G.
  TITLE     Two orthogonal cleavages separate subunit RNAs in mouse ribosome
            biogenesis
  JOURNAL   Nucleic Acids Res 42 (17), 11180-11191 (2014)
   PUBMED   25190460
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK334116.1, BC046791.1, AK134445.1 and BB338032.1.
            
            On Oct 20, 2009 this sequence version replaced NM_030132.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660815.46634.1, AK134445.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                CK334116.1         13-67
            56-2268             BC046791.1         1-2213
            2269-2909           AK134445.1         2199-2839
            2910-2917           BB338032.1         274-281
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 19.49 cM"
     gene            1..2917
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /note="UTP23 small subunit processome component"
                     /db_xref="GeneID:78581"
                     /db_xref="MGI:MGI:1925831"
     exon            1..270
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..832
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /note="UTP23, small subunit (SSU) processome component,
                     homolog"
                     /codon_start=1
                     /product="rRNA-processing protein UTP23 homolog"
                     /protein_id="NP_084408.1"
                     /db_xref="CCDS:CCDS27462.1"
                     /db_xref="GeneID:78581"
                     /db_xref="MGI:MGI:1925831"
                     /translation="MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRIQ
                     LRDQLPRYLMGETQLCTTRCVLKELETLGKELYGAKLIAQKCQVRNCPHFKSPVSGSE
                     CLLSMVDEGNPHHYFVATQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKA
                     VEAGQLVSVHEKQSIKQLKEEQGLVRNPDLRRRRRKKKKVGGPNPLSCLKKKKKAQDT
                     KSPASEKKRKRKRIRNRSTLKVSSEQQGAEG"
     exon            271..445
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            446..2917
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      956..961
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      979
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /note="major polyA site"
     regulatory      2249..2254
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2268
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
     regulatory      2585..2590
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2613
                     /gene="Utp23"
                     /gene_synonym="1700010I21Rik; D530033C11Rik"
ORIGIN      
        1 aggggcttcg ttccgggaaa tacaaatttc taggagtgcg gaagtgaggc tggtgccggt
       61 gagtccggtg gcttaaacag gcatgaagat caccaggcag aaacacgcca agaagcatct
      121 cggctttttc cgcaacaatt tcggagtccg cgagccctac cagatccttc tggatggcac
      181 tttctgccag gcggcgctgc ggggtcgcat ccagctgcgg gaccagctgc cccgctacct
      241 tatgggagag acccagctgt gcaccacgag atgtgtgtta aaggagttag aaacactggg
      301 aaaggaatta tatggagcaa aactgattgc acagaaatgc caggttcgaa actgtcctca
      361 tttcaagagc ccagtgagtg ggtctgaatg tctcctgtcc atggtggatg aggggaaccc
      421 tcatcattat tttgtggcca cacaggatca gaacttatct gtgaaagtca agaggactcc
      481 tggaattcct ctcatgttca ttattcagaa cactatagtg ttggacaagc cttctcccag
      541 aacagtggcc tttgtgaagg cggtcgaggc gggtcagctg gtctcagtgc acgagaaaca
      601 gagtatcaag caactgaagg aggagcaagg cctggtgcgg aacccggacc tgaggaggag
      661 gaggaggaaa aagaagaagg tgggcggccc caatcctctc agctgcctga agaaaaagaa
      721 gaaagcacag gatacaaagt cccctgcttc cgaaaagaaa aggaaaagga aacggattcg
      781 gaacagatcc accctgaaag tgtcttctga gcagcagggt gcagaaggct gatgtgtgct
      841 ggggatactc tggaagacag tggaaactaa cttcctgttc aaactgtgaa aatgtgtata
      901 ccagaggact aacttatttt tgtaaactac tactgctaca tacacttttg ccaaaagtaa
      961 agaatagttg ggtttgtcag tgtgcatctt cagttgttgc tttggggatg tatttttatt
     1021 ataaaattat ctccagtttc tccccttctc accctccaag tgctgtgtat gtgtgtggta
     1081 tatgagtggt atgtgtttgt gagcctctct ctctctctct ctctctctct ctctctctgt
     1141 gtgtgtaggt gcagtagtgt ttgtgagctt gttgggcggt gggggggggg ggtgagcgtg
     1201 tgtatgaagc agctagaggt cagcatgaag tgtctttctc tatcactctc taccattatt
     1261 ttttgagaga gtttctcact gaatcaataa cttgccagtt aagtggtcct ggatggccgt
     1321 taagccccag agatcctcct gtctcctttc tggtgctggg attgacagca ttcactgttg
     1381 aatgtggctt tctgtatgag tctgaggatc tgaacccaac tcctcacagt agtacggcag
     1441 gtaaggtcct gactgaggca tcaccccagc accacataat tttaaaagtc agtcctaagg
     1501 ccagtgagat gactcagtgg gtgtcttagt cagggtttct attcctgcac aaacatcatg
     1561 accaagaagc aagttgggga ggaaagggtt tattctgctt acacttccac attgctgttc
     1621 atcaccaaag gaaatcagga ctggaactca agcaggtcag gaagcaggag ctgatgcaga
     1681 ggccatggag ggatgttctt tactgacttg cctcccctgg cttgctcaac ttgctctctt
     1741 atagaaccca agactaccag cccagggatg gcacaaccca caaggggcct ttcccccttg
     1801 atcactaatt gagaaaatgc cttgcagttg gatctcttgg aggcatttcc tcaactgaag
     1861 ctcctttctc tgtgataact ccagcctgtg tcaagttgac acacaaaacc agccggtaca
     1921 gtgggtaaag acgcctgctg cctaccttga taactgaacc tcgtccctga gacctagaga
     1981 ccagacctga ctcccaaaat tgtcttctta cctccacacc tccacgcaaa acaaattaat
     2041 gtcatttgta aaagtcagtt ctaagggagg aaagggggat agcttaccca ttattttgta
     2101 tatggcaata aaatctgtaa gagcttaaga taaaagttgt atctttgaca gttggagaaa
     2161 cctccacatt caactaactg ttgaatacaa tgctaccgtc tgctctcaat agcctggaaa
     2221 ggatggctat agcaccttac attttcctaa taaacaagtg ttgtagtatt tattggtcat
     2281 aaactcgttt ttagcattgt gcatggctga gcaaggtgac atgtagtgtg gctaaattta
     2341 ttacattgct cttcctgaaa ctaatagcgt tgggcttctt cattgcccag taacatggca
     2401 tatagttaca ctcatccaat agtttgaagt catttttacc atgcaatact tagctgggtt
     2461 ctcctgatgt cctccagtgt ggctgtgctt tctgctgagc atgctactca gatattgtta
     2521 ggtactgtcc tctggagaac tgtcatggta ggcttttttt cttcttcttg tattcccttg
     2581 ctgtaataaa gcacaaagca agtaagaaat ccatatttga gagtatctac tgcctttatt
     2641 acaaactaca tgagtcctag ctgaagttca cttcaatttt cttaaatctt gtttatttat
     2701 tgtcctaagg aaaacattcc atttttaagc cccacaggtt caataatgtg ttgatttttg
     2761 tttctgatag ctgatctgaa tactatccct caatggcaag aattctaaaa taatgttcta
     2821 ctgggtattc tgataaagtg tccaaattat ttgattcaat tagaaaattg aatgtctagg
     2881 tttatgtaaa ataaaatggt tgtgatttga caagttt
//
