LOCUS       NM_001013375            2613 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus UTP18 small subunit processome component (Utp18),
            mRNA.
ACCESSION   NM_001013375 XM_109904
VERSION     NM_001013375.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Trivedi,C.M., Zhu,W., Wang,Q., Jia,C., Kee,H.J., Li,L.,
            Hannenhalli,S. and Epstein,J.A.
  TITLE     Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic
            cardiac myocyte proliferation
  JOURNAL   Dev Cell 19 (3), 450-459 (2010)
   PUBMED   20833366
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY743008.1, BC119622.1, AK078033.1, AK032265.1 and BG067111.2.
            
            On Mar 20, 2005 this sequence version replaced XM_109904.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC119621.1, SRR1660813.211693.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                BY743008.1         1-27
            28-1783             BC119622.1         1-1756
            1784-1940           AK078033.1         920-1076
            1941-2117           BC119622.1         1913-2089
            2118-2586           AK032265.1         2640-3108
            2587-2613           BG067111.2         1-27                c
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 58.84 cM"
     gene            1..2613
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="UTP18 small subunit processome component"
                     /db_xref="GeneID:217109"
                     /db_xref="MGI:MGI:1923402"
     exon            1..433
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..1768
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="WD repeat domain 50; WD repeat-containing protein
                     50; UTP18, small subunit (SSU) processome component,
                     homolog"
                     /codon_start=1
                     /product="U3 small nucleolar RNA-associated protein 18
                     homolog"
                     /protein_id="NP_001013393.1"
                     /db_xref="CCDS:CCDS25245.1"
                     /db_xref="GeneID:217109"
                     /db_xref="MGI:MGI:1923402"
                     /translation="MPPERKSRTRRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPA
                     EPRAAPSAGSAAAAAEEEESRLRQRNRLTLEDDKPAAERCLEQLVFGDVEDDEDALLQ
                     RLRSSRGQLHGSSDESEVENEAKDIFSQKKKQPVWVDEDDEDEEIVDMSNNRFRKDIM
                     KNASESKLSKDKLQKRLKEEFQHAMGGVPDWAEAGSKRRTSSDDESEEDEDDLLQRTG
                     NFISTSTSLPRGILKMKNCRPANAERPTTARISSVQFHPGAQVVMVSGVDNAISLFQV
                     DGKTNPKIQSIYLEKFPIFKACFSANGEEVLATSMHSKVLYVYDMLAGKLIPVHQVRG
                     LKEKTVKQFEVSPDGSFLLISGIAGFSHLLSMKTKELIGSMKINGRIAASTFSSDSKR
                     IYTYSENGEVYVWDVNSRKCMNRFLDEGSLCGLSIAASKNGQYVACGSKSGVVNIYNQ
                     DSCLQQTNPKPIKAIMNLVTGVTSLAFNPTTEILAVASRKMKEAVRLVHLPSCTVFSN
                     FPVFKKSTLSRVQTMDFSPRGGYFALGNEKGRALMYRLHHYSDF"
     exon            434..549
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            550..648
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            649..719
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            720..808
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            809..934
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1109
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1210
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1301
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1302..1425
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1426..1600
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1601..1743
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1744..1787
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     exon            1788..2613
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1885..1890
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="hexamer: AATAAA"
     polyA_site      1909
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="major polyA site"
     regulatory      2001..2006
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="hexamer: AATAAA"
     polyA_site      2022
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
     regulatory      2568..2573
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="hexamer: ATTAAA"
     regulatory      2586..2591
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
                     /note="hexamer: ATTAAA"
     polyA_site      2592
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
     polyA_site      2606
                     /gene="Utp18"
                     /gene_synonym="6230425C22Rik; 6430513M13; Wdr50"
ORIGIN      
        1 agactccttc cggctccccg gggccgggcc gaggagaaga gcgagccgcc ccggcacatg
       61 cgcagtggta ctccacgtga acgtcggcgt tttcccctca gccctgagga tgccgcccga
      121 acgcaagagc cggacgagac gagaccggag agccggcgca acgccgggga ggaaagccag
      181 acccgggagc ggcagcacgc ccgcaaaggc cgcccgttca tcccaacgga cacagccggc
      241 cgagccgagg gcggccccta gcgcgggatc cgcggcggcg gcggcagagg aggaggagag
      301 ccggctccgg cagcggaacc gcctgacgct agaggacgat aagccggccg ccgagcgttg
      361 cctggagcag ctcgtcttcg gcgatgtcga ggacgacgag gacgcgctgc tgcagcggct
      421 gcggagctcg cggggtcagc tacatggaag ctcagatgaa tcggaagtgg aaaatgaagc
      481 aaaagacatt ttttctcaga agaagaagca gccagtttgg gtggatgaag atgatgaaga
      541 tgaggaaata gttgacatgt cgaacaatcg gtttcggaaa gatataatga aaaatgccag
      601 tgaaagtaaa ctttcaaaag ataaacttca aaagagactt aaagaagaat tccagcatgc
      661 catgggagga gtacctgatt gggcagaagc tgggagcaag cggaggacat cttcagatga
      721 tgaaagtgaa gaggatgaag atgatttgtt gcaaaggact gggaatttca tctccacatc
      781 cacgtctctt ccaagaggaa tcttgaagat gaagaactgc cggcctgcca atgctgaacg
      841 gccaaccact gctcggatct cgtcagtgca gttccatcct ggtgcacagg tggtgatggt
      901 ctctggggta gataatgcta tctccctctt tcaggttgat ggcaaaacaa accctaaaat
      961 ccagagcatc tatttggaga agtttccaat ctttaaggct tgtttcagtg ctaatggaga
     1021 agaggtttta gccacaagta tgcacagcaa ggttctttat gtctatgata tgctagctgg
     1081 gaagttaatt cctgtacatc aagtgagagg tttgaaagag aaaacagtga agcagtttga
     1141 agtctcccca gatggatcct tcttgctcat aagcggcatt gcagggtttt ctcacttgct
     1201 atcgatgaag acaaaagaac tcataggtag catgaagatt aatggacgaa ttgcggcatc
     1261 cacattctct tcagatagta agaggatata tacctattct gagaatggag aagtttatgt
     1321 gtgggatgtg aattcaagga agtgcatgaa cagatttctt gatgaaggca gtttatgtgg
     1381 attgagcatt gctgcatcaa agaatggaca gtatgtggct tgtggttcta agagtggagt
     1441 ggtaaacata tacaatcaag attcctgcct ccagcaaaca aacccaaagc caataaaagc
     1501 aataatgaat ctggttactg gtgttacttc cttggccttt aatcctacca cagaaatctt
     1561 ggcagtggct tcaagaaaaa tgaaagaagc tgtcagattg gttcatcttc cttcctgtac
     1621 agtattttct aactttccag tttttaaaaa gagtactctt tctcgtgttc aaaccatgga
     1681 tttttctccc agaggtggat actttgcctt agggaatgaa aagggcaggg ccctgatgta
     1741 taggttgcat cattactcag acttctgaag attttttttt ttttgaaatc cagttgaaaa
     1801 atcccatctc agtacatctt cccagaagtt tccaagtgtg ataatatatg aataatgatt
     1861 tgtggaattt agcagcagtg tcttaataaa tttataactt tgacaataag tgtacatgat
     1921 tttttttcat ctttgtgtca agaatgtgat ttctatgcat tttctttaaa actaaatgtg
     1981 agaaatggaa acctgtctgt aataaaaagt aatataggta aatattttca ttagtattcc
     2041 tcctgtgcac agatctgtcc aggcttcaga gcagggcttt taaaactatc cagtagcctt
     2101 tttttttttt tttttttttt taagaaacag gctctcaaaa cttgctgtgt agaccaggct
     2161 gccttcacag acatcccctt ctgcctccaa aatgctaata ctaaataata aactgctaag
     2221 ttataaatgc cactccacct ggctctagca ccaatttttt tatccaattc tatgtatata
     2281 ggtgtataaa attggtatat aagcattttt gtatatttta ccacttatta agtgtaaaaa
     2341 caagtttgta tactaaagag atggatgtat atgtttatta cataaagaat tgtttgttgg
     2401 ctgaatattt gatactgtaa gacataaata catcttcatt tttttttcag ggttgatatt
     2461 ttgattttgt aatcactgct gagaatgtta tgccttaata cattatagaa aatggcaaaa
     2521 gtatatttag gactgtttca gaaattagaa aatctgttct aatcctaatt aaactttatt
     2581 taattattaa aactttttat tgtaaagaaa ttt
//
